PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936427.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 739aa    MW: 83967.8 Da    PI: 7.1161
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936427.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.43.3e-25112197290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fYn+YA  vGFsvrksk+ ++++ +    rt+vCsk+g+r+++k    + +++r+ trtgC a++++k + +g+++vt+++ +HnH la
  XP_010936427.1 112 FYNSYAACVGFSVRKSKMWTTSK-DVLAARTLVCSKQGFRQKKKGF--EPKKPRPATRTGCPACMTIKITPSGRYRVTEFVPDHNHLLA 197
                     9*******************955.559***************9988..999***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-22112197IPR004330FAR1 DNA binding domain
PfamPF105516.8E-26292386IPR018289MULE transposase domain
PROSITE profilePS5096610.361560607IPR007527Zinc finger, SWIM-type
PfamPF044345.8E-5560605IPR007527Zinc finger, SWIM-type
SMARTSM005757.8E-4582609IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MEERMGPAKC ESEAETPTHY PTHSLLARNR SASSLHQTLA SLLPVSHLSA PPSLSRFLAC  60
PSPRGISAVF PSLSFSINQA MGVAEHADVP PNPGWIPHLD MQFDNEDAAY AFYNSYAACV  120
GFSVRKSKMW TTSKDVLAAR TLVCSKQGFR QKKKGFEPKK PRPATRTGCP ACMTIKITPS  180
GRYRVTEFVP DHNHLLANPS TARLLRSHRA KVKERIAGDS GMPPDSSDKH QLKRRKAMPV  240
GDAGAVLEYL QRMQVENPSF FYAVRVDGND SIANFFWADA KSVMDYQYFG DVVCFDMTYK  300
ACDCGRPFAL FVGVNNHKQM IIFGSALLYD ESVESLRWLL DTFKDAMRGK QPKTVLTDQC  360
MEITDALVAA WPRTTHRICV WHVYQNAMMH LNQVFEGSKT FAHDFGQCIF DCEEEEEFVY  420
AWRAMIDKYD LDDNEWLAKL YEDRLTWALP YGKQVFCADI KSSLQKENLI SLLKKHLSPQ  480
QELLPFFEHY DTLLNERRCL ELQADAHAGQ NILKVPPLRM LKQAANVYTP AVFKLFQNEF  540
EMYMDCMVYH CGDAGTISDY KVIVDEKSRE HFVRYDSSDS SIFCSCKKFE SAGIQCRHVF  600
KVLDYRNIKE LPPRYILKRW RKDAKLGAVT DHHEYPSADS SKSLIANRDN DLCCIFSTLA  660
ARAAKTVESF TFIESQSELL LEQVEHILQT RTFEIPQLTI ASSIQPRNLI ESVVESLNHD  720
NNTDTNVIIS AANGISFTY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029123926.10.0protein FAR1-RELATED SEQUENCE 5 isoform X3
TrEMBLA0A2H3YYU90.0A0A2H3YYU9_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_008805974.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-111FAR1-related sequence 5