PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936206.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 349aa    MW: 39410.4 Da    PI: 7.3586
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936206.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092743092055
                     HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  XP_010936206.1 274 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 309
                     4679*****************************885 PP

2ELK37.84e-13229250122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+Ll+KYsgyL+sL+qE+s
  XP_010936206.1 229 ELKHHLLKKYSGYLSSLRQELS 250
                     9*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.7E-2287131IPR005540KNOX1
PfamPF037902.5E-2288130IPR005540KNOX1
SMARTSM012561.4E-27138189IPR005541KNOX2
PfamPF037916.3E-23144188IPR005541KNOX2
SMARTSM011882.8E-7229250IPR005539ELK domain
PROSITE profilePS5121311.523229249IPR005539ELK domain
PfamPF037893.5E-10229250IPR005539ELK domain
PROSITE profilePS5007113.005249312IPR001356Homeobox domain
SuperFamilySSF466891.54E-19250322IPR009057Homeodomain-like
SMARTSM003892.7E-12251316IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-27254316IPR009057Homeodomain-like
CDDcd000863.96E-12261313No hitNo description
PfamPF059201.3E-16269308IPR008422Homeobox KN domain
PROSITE patternPS000270287310IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MELSQPGANP RGGRFMYASS SMATASTTAT TTPTTVLVAP PTTASISIYS GPNPKASTFP  60
HLQPPKPEAS SSSSSHLYPL TRPTDVDAMK SRIISHPHYS NLLNAYMDCQ KVGAPPEVAD  120
RLAAVAREFE ARQRAGMGCR DQPADPELDQ FMEAYYHMLV KYREELTRPM QEAMDFLRRV  180
ESQFNSLTNG SFRILSDDKC GVCSSEEDQE GSGGETELPE LDPRAEDREL KHHLLKKYSG  240
YLSSLRQELS KKKKKGKLPK EARQKLLSWW ELHYKWPYPS ETEKVALAES TGLDQKQINN  300
WFINQRKRHW KPSEDNMQFV MVDGYHPQNA AALYMDGHFM GEGLYRLGP
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936206.10.0homeotic protein knotted-1 isoform X1
SwissprotQ413301e-142KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA0A2H3XYG00.0A0A2H3XYG0_PHODC; homeotic protein knotted-1-like
STRINGXP_008790432.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98863145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-107KNOTTED-like from Arabidopsis thaliana