PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010936206.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TALE | ||||||||
Protein Properties | Length: 349aa MW: 39410.4 Da PI: 7.3586 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.2e-09 | 274 | 309 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ XP_010936206.1 274 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 309 4679*****************************885 PP | |||||||
2 | ELK | 37.8 | 4e-13 | 229 | 250 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+Ll+KYsgyL+sL+qE+s XP_010936206.1 229 ELKHHLLKKYSGYLSSLRQELS 250 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.7E-22 | 87 | 131 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.5E-22 | 88 | 130 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.4E-27 | 138 | 189 | IPR005541 | KNOX2 |
Pfam | PF03791 | 6.3E-23 | 144 | 188 | IPR005541 | KNOX2 |
SMART | SM01188 | 2.8E-7 | 229 | 250 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.523 | 229 | 249 | IPR005539 | ELK domain |
Pfam | PF03789 | 3.5E-10 | 229 | 250 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.005 | 249 | 312 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.54E-19 | 250 | 322 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.7E-12 | 251 | 316 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 254 | 316 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.96E-12 | 261 | 313 | No hit | No description |
Pfam | PF05920 | 1.3E-16 | 269 | 308 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 287 | 310 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MELSQPGANP RGGRFMYASS SMATASTTAT TTPTTVLVAP PTTASISIYS GPNPKASTFP 60 HLQPPKPEAS SSSSSHLYPL TRPTDVDAMK SRIISHPHYS NLLNAYMDCQ KVGAPPEVAD 120 RLAAVAREFE ARQRAGMGCR DQPADPELDQ FMEAYYHMLV KYREELTRPM QEAMDFLRRV 180 ESQFNSLTNG SFRILSDDKC GVCSSEEDQE GSGGETELPE LDPRAEDREL KHHLLKKYSG 240 YLSSLRQELS KKKKKGKLPK EARQKLLSWW ELHYKWPYPS ETEKVALAES TGLDQKQINN 300 WFINQRKRHW KPSEDNMQFV MVDGYHPQNA AALYMDGHFM GEGLYRLGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Appears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00675 | ChIP-seq | Transfer from GRMZM2G017087 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010936206.1 | 0.0 | homeotic protein knotted-1 isoform X1 | ||||
Swissprot | Q41330 | 1e-142 | KN1_SOLLC; Homeotic protein knotted-1 | ||||
TrEMBL | A0A2H3XYG0 | 0.0 | A0A2H3XYG0_PHODC; homeotic protein knotted-1-like | ||||
STRING | XP_008790432.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9886 | 31 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-107 | KNOTTED-like from Arabidopsis thaliana |