PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010936186.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | AP2 | ||||||||
Protein Properties | Length: 662aa MW: 72210 Da PI: 7.0408 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 3.7e-16 | 313 | 372 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_010936186.1 313 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 372 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 45.6 | 1.7e-14 | 417 | 466 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_010936186.1 417 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 466 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.88E-22 | 313 | 380 | No hit | No description |
Pfam | PF00847 | 9.1E-13 | 313 | 372 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-16 | 313 | 382 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.203 | 314 | 380 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-16 | 314 | 381 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-29 | 314 | 386 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 315 | 326 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-17 | 415 | 475 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.36E-24 | 415 | 476 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.3E-18 | 416 | 474 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-33 | 416 | 480 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.177 | 416 | 474 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-9 | 417 | 466 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 456 | 476 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence Send to blast |
MKSMNNNNNN NNNGWLGFSL SPQMNMEVSS EPHHPTNNQS HHHQAQPTHA AVSSAVPCSF 60 FLSPPQLSSS GLCYGVEGEN GGLYSQLSVM PLKSDGSLCI MEALSRSQQQ GMVPSPSPKL 120 EDFLGGGPNL GSHHHYGNNE RGAMALSLDS IYYHQNSQPE GNRSHPLDLL QVQQHQQQHP 180 YFQPLQEGLC SGLTGHEIYQ GPLEEEPMAD DGIPSLKNWV AGHYGACSNG LGEEGGIGSS 240 SVGTMGYGDL QSLSLSMSPG SQSSCVTAPQ QISPAAPTEC MALDTPKKRG TGKGGPKQPV 300 HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QTRKGRQVYL GGYDMEEKAA 360 RAYDLAALKY WGPSTHINFP LENYQEELEE MKNMSRQEYV AHLRRKSSGF SRGASMYRGV 420 TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGVNAV TNFDITRYDV 480 EKIMASPTLL SGELARRTKA IEAGNDASSI QNSSRELDLT EENNSSASDW KMVLYQSPQQ 540 TPQSSESLNH KSVTGAGDHR SSATLSAALH GIVGVETVGS VKGVEDSGKI GNNHISNPSS 600 LVTSLSSSRE GSPDRNGLSM LYTKPSPNFI NPTPMSSWIP STQIRTTISM AQMPVFAAWH 660 DV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010936186.1 | 0.0 | AP2-like ethylene-responsive transcription factor CRL5 | ||||
Swissprot | Q38914 | 1e-165 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A2H3ZLD1 | 0.0 | A0A2H3ZLD1_PHODC; LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor CRL5 | ||||
STRING | XP_008784660.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-125 | AP2 family protein |