PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010936185.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 173aa MW: 19992.3 Da PI: 10.0407 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.3 | 7.3e-13 | 108 | 152 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E+ l++++ + +G+g+Wk I+r ++t q+ s+ qk+ XP_010936185.1 108 PWTEKEHRLFLKGLAAYGKGDWKNISRNSVVTKTSSQVASHAQKF 152 8******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.9 | 9 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.02E-9 | 11 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.972 | 13 | 59 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 18.493 | 101 | 157 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-14 | 103 | 157 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-16 | 105 | 155 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.2E-10 | 105 | 155 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-9 | 107 | 149 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-9 | 108 | 151 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.66E-8 | 108 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MSSNETPSLQ TQWSWYENKT FEVALTEYPE GTPNRWPLIT AKLSGKSLCQ VLDHYRALIH 60 DLELIDSGKV ETPNYRYDDN SDRSNMAPKQ HPTTARSGRG EERRKSVPWT EKEHRLFLKG 120 LAAYGKGDWK NISRNSVVTK TSSQVASHAQ KFFNRRQQNK ESKRKSIHDI TDP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010936185.1 | 1e-128 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 5e-41 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A3Q0I0I6 | 6e-75 | A0A3Q0I0I6_PHODC; transcription factor DIVARICATA-like | ||||
STRING | XP_008789580.1 | 1e-75 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2895 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-48 | MYB family protein |
Publications ? help Back to Top | |||
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