PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010936184.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

GRF

Protein Properties

Length: 611aa MW: 65497 Da PI: 7.0396

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010936184.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.7	4.9e-24	230	274	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_010936184.1 230 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 274 79****************************************985 PP
2	QLQ	57.3	4.6e-20	160	196	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+Pp Ll+ i++ XP_010936184.1 160 GPFTPSQWMELEHQALIYKYIDANVPIPPSLLVSIKR 196 59*******************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.5E-12	160	196	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.152	161	196	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	9.2E-15	161	194	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.455	230	274	IPR014977	WRC domain
Pfam	PF08879	2.2E-20	231	273	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence Send to blast
MDLGGVVGME GLVGGAFCEG GGLFSSSLAL SDSEIKQTGV LCSSFLKHAR PGGSEEDDWR 60 FPKMARTEAM AVPNIPRGAA SLYRSNSHSL FPEGEQMLSF SSTPSSKPDA MVLGSDVTLP 120 YYHHPSASSS TPYFRNTVVS GLGSSGSNAN MNGVLARLRG PFTPSQWMEL EHQALIYKYI 180 DANVPIPPSL LVSIKRSLNP SGYPPISAGS FGSSALGWGP FHLGYSGNAD PEPGRCRRTD 240 GKKWRCSRDA VADQKYCERH MNRGRHRSRK HVEGHTGHAA KAMPIIAPSQ SASAVSGSGS 300 STSLTVAQQQ NKSLQSNATD PCPAPLINRM LMSKENVNDH VQGSQSLSTL NSINTKPVNT 360 LFPFAKQHDP FDVASSQADF GHISTEIVLD PSRSSSEKFS FIPTPKLNEQ QPQSHPFRHF 420 IDDWPKNQSE RSTITWPDVE EMQSDRTQLS ISIPMASSDI SSSSSSPNQE KLTLSPLKLS 480 RDFDPTHMGL GVGGVLNEVS QRQASWIPIS WEASIAGPLG EVLTNTSSTP KDQGKNCSSS 540 SLNLLTDGWD SSPRLQSSPT AVLQKTTFGS VSSSTGSSPL AESHKTHDST GSLCNDLLGS 600 NLVDPPIIPS L

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence Send to blast

MDLGGVVGME GLVGGAFCEG GGLFSSSLAL SDSEIKQTGV LCSSFLKHAR PGGSEEDDWR  60
FPKMARTEAM AVPNIPRGAA SLYRSNSHSL FPEGEQMLSF SSTPSSKPDA MVLGSDVTLP  120
YYHHPSASSS TPYFRNTVVS GLGSSGSNAN MNGVLARLRG PFTPSQWMEL EHQALIYKYI  180
DANVPIPPSL LVSIKRSLNP SGYPPISAGS FGSSALGWGP FHLGYSGNAD PEPGRCRRTD  240
GKKWRCSRDA VADQKYCERH MNRGRHRSRK HVEGHTGHAA KAMPIIAPSQ SASAVSGSGS  300
STSLTVAQQQ NKSLQSNATD PCPAPLINRM LMSKENVNDH VQGSQSLSTL NSINTKPVNT  360
LFPFAKQHDP FDVASSQADF GHISTEIVLD PSRSSSEKFS FIPTPKLNEQ QPQSHPFRHF  420
IDDWPKNQSE RSTITWPDVE EMQSDRTQLS ISIPMASSDI SSSSSSPNQE KLTLSPLKLS  480
RDFDPTHMGL GVGGVLNEVS QRQASWIPIS WEASIAGPLG EVLTNTSSTP KDQGKNCSSS  540
SLNLLTDGWD SSPRLQSSPT AVLQKTTFGS VSSSTGSSPL AESHKTHDST GSLCNDLLGS  600
NLVDPPIIPS L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010936184.1	0.0	growth-regulating factor 6
Swissprot	Q6AWY3	1e-145	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A2H3XY57	0.0	A0A2H3XY57_PHODC; growth-regulating factor 6-like
STRING	XP_008790288.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	2e-75	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]