PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936123.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 350aa    MW: 38397.7 Da    PI: 6.7968
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936123.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox309e-101331701954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  XP_010936123.1 133 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 170
                     665559******************************88 PP
2BELL98.36.4e-329641772
            BELL 17 eeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                    +eVd+rY++y++q+q+v++sF+ v+g g+a+pYt+lA+ka+SrhFrcLkdaia q+
  XP_010936123.1  9 NEVDRRYNHYCDQMQMVVNSFDSVMGFGAATPYTALAQKAMSRHFRCLKDAIAVQL 64
                    69***************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-7162IPR006563POX domain
PfamPF075261.4E-28961IPR006563POX domain
PROSITE profilePS5007112.568111174IPR001356Homeobox domain
SMARTSM003891.2E-9114178IPR001356Homeobox domain
CDDcd000869.35E-14114175No hitNo description
SuperFamilySSF466891.07E-17115181IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-29117180IPR009057Homeodomain-like
PfamPF059201.4E-18131170IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGLESTGANE VDRRYNHYCD QMQMVVNSFD SVMGFGAATP YTALAQKAMS RHFRCLKDAI  60
AVQLKQTCEL LGDKEAGSGS GLTKGETPRL RFIDQTLRQQ RAFHQMGMME QEAWRPQRGL  120
PERSVNILRA WLFEHFLHPY PSDADKHLLA RQTGLSRNQV SNWFINARVR LWKPMVEEMY  180
QQEAKEDSEE RETSEAGHQE AQSPAQQQQQ QQHQQPQGQK PDTNAPSEMD PSLAPPSTSR  240
HHHHLLATSS SSADNPPPAA VGHPSTGGAG GGGDNAPLVG IDAPELCRPD VHMGPTNDMY  300
RYGATSAATL GPAAQMRFGT AGDVSLTLGL RHAGGNAAEK GRFSVRDFSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-17120178563Homeobox protein Meis2
3k2a_B7e-17120178563Homeobox protein Meis2
4xrm_A8e-17120178563Homeobox protein Meis2
4xrm_B8e-17120178563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019709904.10.0BEL1-like homeodomain protein 4
SwissprotQ94KL51e-118BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLA0A2H3ZGQ40.0A0A2H3ZGQ4_PHODC; BEL1-like homeodomain protein 4
STRINGXP_008813264.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-114BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]