PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936122.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 355aa    MW: 39307.9 Da    PI: 7.791
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936122.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.2e-101381751954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  XP_010936122.1 138 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 175
                     665559******************************88 PP
2BELL95.64.5e-3116691972
            BELL 19 VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                    Vd+rY++y++q+q+v++sF+ v+g g+a+pYt+lA+ka+SrhFrcLkdaia q+
  XP_010936122.1 16 VDRRYNHYCDQMQMVVNSFDSVMGFGAATPYTALAQKAMSRHFRCLKDAIAVQL 69
                    9**************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.1E-9167IPR006563POX domain
PfamPF075261.0E-271666IPR006563POX domain
PROSITE profilePS5007112.568116179IPR001356Homeobox domain
CDDcd000863.71E-13119180No hitNo description
SMARTSM003891.2E-9119183IPR001356Homeobox domain
SuperFamilySSF466891.11E-17120186IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-29122185IPR009057Homeodomain-like
PfamPF059201.4E-18136175IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MVRQHHMQKR QADRPVDRRY NHYCDQMQMV VNSFDSVMGF GAATPYTALA QKAMSRHFRC  60
LKDAIAVQLK QTCELLGDKE AGSGSGLTKG ETPRLRFIDQ TLRQQRAFHQ MGMMEQEAWR  120
PQRGLPERSV NILRAWLFEH FLHPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM  180
VEEMYQQEAK EDSEERETSE AGHQEAQSPA QQQQQQQHQQ PQGQKPDTNA PSEMDPSLAP  240
PSTSRHHHHL LATSSSSADN PPPAAVGHPS TGGAGGGGDN APLVGIDAPE LCRPDVHMGP  300
TNDMYRYGAT SAATLGPAAQ MRFGTAGDVS LTLGLRHAGG NAAEKGRFSV RDFSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A9e-17125183563Homeobox protein Meis2
3k2a_B9e-17125183563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019709904.10.0BEL1-like homeodomain protein 4
SwissprotQ94KL51e-118BLH4_ARATH; BEL1-like homeodomain protein 4
SwissprotQ9SW801e-117BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A2H3ZGQ40.0A0A2H3ZGQ4_PHODC; BEL1-like homeodomain protein 4
STRINGXP_008813264.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44332945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-113BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]