PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010935900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 241aa MW: 26935.1 Da PI: 5.3352 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.9 | 1.9e-07 | 61 | 85 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 W++Ia+ ++ gRt++++k+ w+++l XP_010935900.1 61 EWSAIAAQLP-GRTDNEIKNVWHTHL 85 4*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.39E-7 | 58 | 91 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-12 | 60 | 86 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-5 | 61 | 85 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.168 | 62 | 85 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.33E-4 | 62 | 85 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MIAFLRFLQK IITSFNNKTA QTSRRFSFVR LRLSLQSSHV PAGRTVRHPE TTLFAWKDFS 60 EWSAIAAQLP GRTDNEIKNV WHTHLKKRVN PNQPVQNPYR KRKAQSDEAM AGMGFGPTAP 120 NGKLQNPSPG PVSPSQSCSD ISSSATNSST ITEEINIAGI KEECTDSSEE LPEIDESFWS 180 EALSIENCDT PMDYNMIAGP PPTSLGHAFF SFSPSNYNND DINFWLKVFM EAGDFQELPD 240 I |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 102 | KKRVNPNQPVQNPYRKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010935898.1 | 1e-131 | transcription factor MYB30 | ||||
TrEMBL | A0A3Q0IHD0 | 3e-74 | A0A3Q0IHD0_PHODC; transcription factor MYB30 isoform X2 | ||||
STRING | XP_008805219.1 | 3e-74 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.2 | 2e-16 | myb domain protein 15 |