PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935821.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 283aa    MW: 30248.9 Da    PI: 6.9186
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935821.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011125147123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+k+F++   L  H  +H
  XP_010935821.1 125 YECKTCSKCFPSFQALGGHRASH 147
                     99**********99999998887 PP
2zf-C2H213.80.00018197219123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  Fs+   L  H+r+H
  XP_010935821.1 197 HECSICGSEFSSGQALGGHMRRH 219
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.75E-9124147No hitNo description
PfamPF139121.8E-11124149IPR007087Zinc finger, C2H2
SMARTSM003550.18125147IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159125152IPR007087Zinc finger, C2H2
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
SuperFamilySSF576672.75E-9192219No hitNo description
PfamPF139128.8E-12196220IPR007087Zinc finger, C2H2
PROSITE profilePS501579.764197219IPR007087Zinc finger, C2H2
SMARTSM003550.02197219IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEIPEEAIIS NNNTECTHAV VKGKRTKRQK LHLPPVPAAA AAAPTSSNSS DEFSGTTTEE  60
EEDMANCLIL LAQGRALDTT PKPGSPTEEG TAGPANSNGA TEKFTSRRFA EATTTTNGKA  120
GFYVYECKTC SKCFPSFQAL GGHRASHKKP KLGIPMTGTE EKKAVIDEDS IQISMNSISK  180
SIMAASNTNS NSKPKVHECS ICGSEFSSGQ ALGGHMRRHR PLSIPENSEA KKERSVLCLD  240
LNLPAPSDDD RGEFPKSPSA VAFPFESKQP LVFSASALVD CHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935821.10.0zinc finger protein ZAT5
TrEMBLA0A2H3XQY61e-165A0A2H3XQY6_PHODC; zinc finger protein ZAT5
STRINGXP_008787454.11e-166(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-55C2H2 family protein