PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010935742.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TALE | ||||||||
Protein Properties | Length: 735aa MW: 79751.1 Da PI: 6.8561 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.1 | 3.5e-09 | 557 | 589 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LA+++gL+ +qV++WF N R + XP_010935742.1 557 HPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 589 89*****************************88 PP | |||||||
2 | BELL | 111.8 | 3.8e-36 | 408 | 478 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r e+q+kkakLl +l eV++rYkqy++q+q+v+s+F+ vagl sa+pYtslAlk +S+hFrc+k+ai++q+ XP_010935742.1 408 RPEMQQKKAKLLYMLGEVCRRYKQYHQQMQMVVSAFDSVAGLSSATPYTSLALKSVSKHFRCIKNAISDQL 478 669*****************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.6E-50 | 322 | 476 | IPR006563 | POX domain |
Pfam | PF07526 | 8.4E-45 | 327 | 475 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.742 | 530 | 593 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.1E-9 | 533 | 597 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.30E-12 | 533 | 594 | No hit | No description |
SuperFamily | SSF46689 | 8.55E-17 | 535 | 600 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 536 | 597 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.3E-18 | 550 | 589 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 735 aa Download sequence Send to blast |
MQDSQNWLLG MNSFRPESEA HVAQQSRRDK LRVQHIDPIP DLVQVRDVYD PALFSSSAHI 60 HNLPLGGAET SITNPSPSSF QETPGHLARA SDPRGPCVWR AQQPSCDWIV ASPAPMTNSL 120 ASPGASHFKP GFSSYPDAST ELSSQENHEQ QCGDLHFPSS QFHHPALQDV VTSVGDHGLE 180 LPSVREPGQP GSWVDSGNEL LLLPSFAEQP NTVWVSRQPP QWNGEGGFTR GKVEEGFTTV 240 GSEGGAQGLS LTLSSNPASE LHVAQLEERF GLPSSRASGA GQSCPYPRFS MGDRGYGGSL 300 QGMVSSPVAE TRRAVGPLGP FTGYATILKS SRFLKPAQQL LDEFCSAVKQ CHVGGSSCGV 360 SSANCDGVVA GEKENSARGG SSAVSSSSTF HGSSTEAAVG GEAAQIHRPE MQQKKAKLLY 420 MLGEVCRRYK QYHQQMQMVV SAFDSVAGLS SATPYTSLAL KSVSKHFRCI KNAISDQLQH 480 ISKVLGEEFI KSPCSSRGET TMTPKLKYVD QSLRKQKAGE NSLGFVDQNQ PVWRPQRGLP 540 ERAVAVLRAW LFDHFLHPYP TDTDKHMLAT QTGLSRNQVS NWFINARVRL WKPMVEEIHM 600 LETKGMNGMD LNSGNRNGGT KPPIADAGRP SNGQMAEGQC NKPLDCSSME PVLNDGGTQS 660 TEPWHCEKRS RMDECGIPTS MDGNLISFGT YHSAMDVGGL GAVSLTLGLR HEDGQQQQQQ 720 QMRHFGSQML HDFVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-15 | 539 | 596 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-15 | 539 | 596 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010935741.1 | 0.0 | BEL1-like homeodomain protein 8 | ||||
Refseq | XP_010935742.1 | 0.0 | BEL1-like homeodomain protein 8 | ||||
TrEMBL | A0A2H3XQS5 | 0.0 | A0A2H3XQS5_PHODC; BEL1-like homeodomain protein 9 | ||||
STRING | XP_008787379.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 5e-87 | BEL1-like homeodomain 8 |