PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935699.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 303aa    MW: 34274.4 Da    PI: 8.302
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935699.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.7e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
   XP_010935699.1 14 KGPWSPEEDRQLKEYIEKYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding39.81.1e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T  Ed ++ ++ + +G++ W+ Ia++++ gRt++++k++w++
   XP_010935699.1  69 GDFTDNEDRIICNLYASMGSR-WSIIASHLP-GRTDNDIKNYWNT 111
                      679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.033962IPR017930Myb domain
SuperFamilySSF466893.39E-2811109IPR009057Homeodomain-like
SMARTSM007171.3E-131364IPR001005SANT/Myb domain
PfamPF002499.5E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-241569IPR009057Homeodomain-like
CDDcd001671.12E-101662No hitNo description
PROSITE profilePS5129422.66963117IPR017930Myb domain
SMARTSM007173.0E-1267115IPR001005SANT/Myb domain
PfamPF002493.8E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDRQLKEYIE KYGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FTDNEDRIIC NLYASMGSRW SIIASHLPGR TDNDIKNYWN TKLKKKLFGF  120
PSSQRKPHQQ QQQQYQQQHL FSFNLETRSV SFSSPPSLES MQVSQNLLNP IATPTFSSPL  180
PQGSMHRYRV KDNSSLLMFG SEQSCSSSDG SCNQISYGSS VDYELCNVGQ QMGSLESFLH  240
CGSEETEKLL LGGGEASLEY NIDEIKPLVS PINWYNSPFG DDLSSPTAKD SSFKTQGRVM  300
YYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935699.10.0transcription factor MYB36
TrEMBLA0A2H3YLH31e-176A0A2H3YLH3_PHODC; transcription factor MYB36-like
STRINGXP_008800556.11e-176(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-74myb domain protein 36