PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010935646.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HSF

Protein Properties

Length: 361aa MW: 41164.6 Da PI: 4.8448

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010935646.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	118.3	4.4e-37	42	133	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+++++++sws+++nsfvv+d+++fa+++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++ XP_010935646.1 42 FLTKTYDMVDDPTTDRVVSWSQTNNSFVVWDPHTFATSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKT 127 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 ikr+k XP_010935646.1 128 IKRRKP 133 *985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.3E-40	38	131	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	9.2E-64	38	131	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.99E-36	38	131	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.3E-33	42	131	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-20	42	65	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-20	80	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	81	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-20	93	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MNPVLNPAKE EYPGGGSSGC DDSIFAPPSP MEGLHDTGPP PFLTKTYDMV DDPTTDRVVS 60 WSQTNNSFVV WDPHTFATSL LPRYFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG 120 QKHLLKTIKR RKPPSHPPSQ QQTLGSYLEV GQFGLEGEIN RLKRDKQLLV AELVKLSQEQ 180 QNTKEHLKAM EERIQGTEQK QQQMMAFLAR VMRNPNFLQQ LVHENERRRE LEEAISKKRR 240 RSIDRAPEHD DMGTSGNQEL EMPIKIEVLE SSQDLNQDDV SDFESMAKEI QGGARSGMES 300 SEHSEQQEDK SDGELNDDFW EELLNEGLAD EKGRSDIDAR NNGDVNGLAE RLGFLNSSSP 360 K

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MNPVLNPAKE EYPGGGSSGC DDSIFAPPSP MEGLHDTGPP PFLTKTYDMV DDPTTDRVVS  60
WSQTNNSFVV WDPHTFATSL LPRYFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG  120
QKHLLKTIKR RKPPSHPPSQ QQTLGSYLEV GQFGLEGEIN RLKRDKQLLV AELVKLSQEQ  180
QNTKEHLKAM EERIQGTEQK QQQMMAFLAR VMRNPNFLQQ LVHENERRRE LEEAISKKRR  240
RSIDRAPEHD DMGTSGNQEL EMPIKIEVLE SSQDLNQDDV SDFESMAKEI QGGARSGMES  300
SEHSEQQEDK SDGELNDDFW EELLNEGLAD EKGRSDIDAR NNGDVNGLAE RLGFLNSSSP  360
K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	7e-27	40	131	27	129	Heat shock factor protein 1
5d5v_B	7e-27	40	131	27	129	Heat shock factor protein 1
5d5v_D	7e-27	40	131	27	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	130	LKTIKRR
2	226	240	RRRELEEAISKKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010935646.1	0.0	heat stress transcription factor A-2b
Swissprot	Q6VBB2	1e-155	HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBL	A0A2H3ZH90	0.0	A0A2H3ZH90_PHODC; heat stress transcription factor A-2b-like
STRING	XP_008813499.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP308	37	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-112	heat shock transcription factor A6B

Publications ? help Back to Top
Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern. J. Plant Physiol., 2013. 170(14): p. 1277-84 [PMID:23664583]