PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010935558.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

TCP

Protein Properties

Length: 266aa MW: 27074.2 Da PI: 10.5887

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010935558.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126	4.1e-39	33	135	2	105
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.kaaksaa 95 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+ +i+++tgt++++as++++++s+s+a +s s+ + +s+ XP_010935558.1 33 AVKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAESSIIAATGTGTIPASFSSSSTSRSAATHSLSSpS--SSSS 125 789******************************************************************88854455444443333322..2222 PP TCP 96 kskksqksaa 105 + ++k+++ XP_010935558.1 126 SAAADHKNPH 135 2222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.319	39	93	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.3E-34	39	132	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MTTPDRVTNG GQASGGAAQQ QVMAAGANGT ALAVKKPPAK DRHSKVDGRG RRIRMPIVCA 60 ARVFQLTREL GHKSDGQTIE WLLRQAESSI IAATGTGTIP ASFSSSSTSR SAATHSLSSP 120 SSSSSSAAAD HKNPHHLLPP AVPHPFILGK RLRSDDDSSA DKDDSAAAAA GGASGHLIGP 180 AGGFWAVPAR PDFGQLWSFA APEIVMPPAA AAITGRFAAA QPVGEASAAR VGNYLPIAQG 240 HLNLLASLSG APTTAAAAGR REDESR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010935558.1	0.0	transcription factor TCP7
Swissprot	Q9FMX2	2e-77	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2H3YSL0	1e-122	A0A2H3YSL0_PHODC; transcription factor TCP7-like
STRING	XP_008803023.1	1e-123	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-56	TCP family protein