PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935481.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 680aa    MW: 78110.8 Da    PI: 5.7012
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935481.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.15.1e-1758145290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +Y+ YAk+ GF+ r  + ++  ++g+i  r++vCs+  + +e + ++++++r  a+ r gC  ++++++ ++  wev ++  eHnH+++
  XP_010935481.1  58 YYDMYAKQEGFRARDGEVRRL-EDGTICARQYVCSRAKRMREGEAEESNQKRGPAVLRKGCPVMIEIERVSEYGWEVVDFCDEHNHKVV 145
                     8***************99998.8889***********99999999989999999********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-1458145IPR004330FAR1 DNA binding domain
PfamPF105514.3E-25261354IPR018289MULE transposase domain
PROSITE profilePS509669.99530578IPR007527Zinc finger, SWIM-type
PfamPF044342.5E-6552574IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-4553580IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MVTSKEKMVG EELDEFDLAS SEEETSSQEA MRLATEKYDR CDIYLGMEFS TDRQASAYYD  60
MYAKQEGFRA RDGEVRRLED GTICARQYVC SRAKRMREGE AEESNQKRGP AVLRKGCPVM  120
IEIERVSEYG WEVVDFCDEH NHKVVSPYWE KVHKGKPPKS KKKMDVRKEE GVQTNFISDA  180
LEEQTCGYVG VGAEDASNRT MGGKPNAFGS DGQIVLDYFT KWQVRNATCV FAVQLDDEQC  240
LSGVFWSDAR ARLMYNLFSD VVIFDTTTKI NGNKLLFATF LGVNNHAQLV FLGGALVASE  300
TEATFMWIFR SWLEAMHGYQ PGCIITDLDE KIQHATSKMF PNSNHRLCKR HILKKVPQKL  360
SDVCLKFKEF HHEFSDCICK SRTESEFENN WTELVLKYSL RSNEWVSSLY KQRHSWVPAY  420
VTGIFSAGVL TEWHVEGVYS IFDMYINENT TLKEFIKQYE TALRVMLEKE GDEEYKMICS  480
KPELRTPVPM EQQAAEFYTR VMFLKFQKEF IRSLACIAML VSDCGGLELY TVKETMHDDS  540
GSGVIFRRED NVANCSCHFF ESDGILCRHA LTIFKIKQIF IIPDRYILRR WTKFAKNGKA  600
SEDDAIRPND EDATSVVARF NSMFSEAIEI ADKAALSKET YLMAIKFLRE LNVKVGATPI  660
DANVSIEEEN VRQDSYKKGH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935481.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_010935482.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_019709512.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_029123493.10.0protein FAR1-RELATED SEQUENCE 5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-121FAR1-related sequence 5