PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010935431.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 708aa MW: 78951.7 Da PI: 5.2464 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 67.4 | 2e-21 | 128 | 215 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F XP_010935431.1 128 FCKILTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELVARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLLAGDSVLFI 215 99*****************************8544444..49**********************************************97 PP | |||||||
2 | Auxin_resp | 26 | 3.9e-10 | 210 | 241 | 52 | 83 |
Auxin_resp 52 edsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 + + + ++Gt++ +sdldpvrWp+S+Wrs+k XP_010935431.1 210 DSVLFIWYMGTITEISDLDPVRWPHSHWRSVK 241 55555667*********************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.09E-41 | 113 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-34 | 121 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.01E-20 | 127 | 216 | No hit | No description |
PROSITE profile | PS50863 | 10.532 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-19 | 128 | 215 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-17 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-5 | 215 | 241 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.5E-8 | 602 | 700 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.29E-7 | 609 | 686 | No hit | No description |
PROSITE profile | PS51745 | 24.21 | 612 | 696 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 708 aa Download sequence Send to blast |
MKLSTAGLGQ QAQEGGEKRC LNSELWHACA GPLVCLPTVG TRVVYFPQGH SEQVAASTNK 60 EVEGQIPNYP NLPPQLICQL HDVTMHADVE TDEVYAQMTL QPLNPQELND AYLPAEMGII 120 SKQPTNYFCK ILTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELVA RDLHDVEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLLAGD SVLFIWYMGT ITEISDLDPV RWPHSHWRSV 240 KVGWDESTAG ERPPRVSLWE IEPLTTFPMY PSLFPLRLKR PWYPGIPSFH DDGNALMWLR 300 GGAADRGLQS LNFQSPGMGP WVQQRMESTL LGHDHDQYSA MAAPALPDTR GSDYLKQQFL 360 HLQQPYQLPQ QFCSTGPLLQ QQIIQQACEQ QIISPQSQNI SGNLTHNVLH QQLQQSLNNQ 420 KQVQPAQTYP ESYQIPGTNV QQQQAPLPSQ LCEKLEFSDS SVNFSTIMTS SSVQGMLGAA 480 YPEGSSNVLD FARLGQSMMS EQNQQTWEPK FTMSQSTTFG NAVLLPSFHG KDGSVGTENG 540 SADMQNHTLF GVNIDSSSLL SHAVPSLRAN SIDDNISTMP YASSSLQNSI YGSLEESSGV 600 LQNAGEADPT TKTFVKVYKS GSVGRSLDIT RFNNYDELRE ELGQMFGIKG QLEDPLRSGW 660 QLVFVDREND VLLLGDDPWE SFVNNVWYIK ILSPEDVHKM GKRAIEPC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 4e-95 | 13 | 215 | 43 | 245 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_029123484.1 | 0.0 | auxin response factor 12 isoform X3 | ||||
Swissprot | Q258Y5 | 0.0 | ARFL_ORYSI; Auxin response factor 12 | ||||
TrEMBL | A0A2H3YVJ6 | 0.0 | A0A2H3YVJ6_PHODC; Auxin response factor | ||||
STRING | XP_008804149.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30330.2 | 1e-120 | auxin response factor 6 |