PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935431.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 708aa    MW: 78951.7 Da    PI: 5.2464
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935431.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.42e-21128215183
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F 
  XP_010935431.1 128 FCKILTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELVARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLLAGDSVLFI 215
                     99*****************************8544444..49**********************************************97 PP

2Auxin_resp263.9e-102102415283
      Auxin_resp  52 edsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     + +  + ++Gt++ +sdldpvrWp+S+Wrs+k
  XP_010935431.1 210 DSVLFIWYMGTITEISDLDPVRWPHSHWRSVK 241
                     55555667*********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-41113221IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-34121216IPR015300DNA-binding pseudobarrel domain
CDDcd100177.01E-20127216No hitNo description
PROSITE profilePS5086310.532128230IPR003340B3 DNA binding domain
PfamPF023621.4E-19128215IPR003340B3 DNA binding domain
SMARTSM010191.4E-17128230IPR003340B3 DNA binding domain
PfamPF065071.3E-5215241IPR010525Auxin response factor
PfamPF023096.5E-8602700IPR033389AUX/IAA domain
SuperFamilySSF542772.29E-7609686No hitNo description
PROSITE profilePS5174524.21612696IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MKLSTAGLGQ QAQEGGEKRC LNSELWHACA GPLVCLPTVG TRVVYFPQGH SEQVAASTNK  60
EVEGQIPNYP NLPPQLICQL HDVTMHADVE TDEVYAQMTL QPLNPQELND AYLPAEMGII  120
SKQPTNYFCK ILTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELVA RDLHDVEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLLAGD SVLFIWYMGT ITEISDLDPV RWPHSHWRSV  240
KVGWDESTAG ERPPRVSLWE IEPLTTFPMY PSLFPLRLKR PWYPGIPSFH DDGNALMWLR  300
GGAADRGLQS LNFQSPGMGP WVQQRMESTL LGHDHDQYSA MAAPALPDTR GSDYLKQQFL  360
HLQQPYQLPQ QFCSTGPLLQ QQIIQQACEQ QIISPQSQNI SGNLTHNVLH QQLQQSLNNQ  420
KQVQPAQTYP ESYQIPGTNV QQQQAPLPSQ LCEKLEFSDS SVNFSTIMTS SSVQGMLGAA  480
YPEGSSNVLD FARLGQSMMS EQNQQTWEPK FTMSQSTTFG NAVLLPSFHG KDGSVGTENG  540
SADMQNHTLF GVNIDSSSLL SHAVPSLRAN SIDDNISTMP YASSSLQNSI YGSLEESSGV  600
LQNAGEADPT TKTFVKVYKS GSVGRSLDIT RFNNYDELRE ELGQMFGIKG QLEDPLRSGW  660
QLVFVDREND VLLLGDDPWE SFVNNVWYIK ILSPEDVHKM GKRAIEPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-951321543245Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029123484.10.0auxin response factor 12 isoform X3
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLA0A2H3YVJ60.0A0A2H3YVJ6_PHODC; Auxin response factor
STRINGXP_008804149.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.21e-120auxin response factor 6