PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010935430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ARF | ||||||||
Protein Properties | Length: 804aa MW: 89687.1 Da PI: 6.1839 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.9 | 2e-23 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_010935430.1 128 FCKILTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELVARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLLAGDSVLFI--WNE 218 99*****************************8544444..49************************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_010935430.1 219 KNQLLLGIRRA 229 9999****997 PP | |||||||
2 | Auxin_resp | 115.9 | 3.4e-38 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka+ +++svGmRf+m fete+ss rr++Gt++ +sdldpvrWp+S+Wrs+k XP_010935430.1 254 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYVKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEISDLDPVRWPHSHWRSVK 337 79********************************87599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.11E-48 | 113 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-41 | 121 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.64E-21 | 127 | 228 | No hit | No description |
Pfam | PF02362 | 1.1E-21 | 128 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.506 | 128 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-23 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.1E-33 | 254 | 337 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 7.8E-8 | 698 | 796 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.75E-7 | 705 | 782 | No hit | No description |
PROSITE profile | PS51745 | 24.21 | 708 | 792 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 804 aa Download sequence Send to blast |
MKLSTAGLGQ QAQEGGEKRC LNSELWHACA GPLVCLPTVG TRVVYFPQGH SEQVAASTNK 60 EVEGQIPNYP NLPPQLICQL HDVTMHADVE TDEVYAQMTL QPLNPQELND AYLPAEMGII 120 SKQPTNYFCK ILTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELVA RDLHDVEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLLAGD SVLFIWNEKN QLLLGIRRAS RPQTVMPSSV 240 LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LSKYVKAVFH TRISVGMRFR 300 MLFETEESSV RRYMGTITEI SDLDPVRWPH SHWRSVKVGW DESTAGERPP RVSLWEIEPL 360 TTFPMYPSLF PLRLKRPWYP GIPSFHDDGN ALMWLRGGAA DRGLQSLNFQ SPGMGPWVQQ 420 RMESTLLGHD HDQYSAMAAP ALPDTRGSDY LKQQFLHLQQ PYQLPQQFCS TGPLLQQQII 480 QQACEQQIIS PQSQNISGNL THNVLHQQLQ QSLNNQKQVQ PAQTYPESYQ IPGTNVQQQQ 540 APLPSQLCEK LEFSDSSVNF STIMTSSSVQ GMLGAAYPEG SSNVLDFARL GQSMMSEQNQ 600 QTWEPKFTMS QSTTFGNAVL LPSFHGKDGS VGTENGSADM QNHTLFGVNI DSSSLLSHAV 660 PSLRANSIDD NISTMPYASS SLQNSIYGSL EESSGVLQNA GEADPTTKTF VKVYKSGSVG 720 RSLDITRFNN YDELREELGQ MFGIKGQLED PLRSGWQLVF VDRENDVLLL GDDPWESFVN 780 NVWYIKILSP EDVHKMGKRA IEPC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-164 | 13 | 358 | 43 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029123480.1 | 0.0 | auxin response factor 12 isoform X1 | ||||
Refseq | XP_029123481.1 | 0.0 | auxin response factor 12 isoform X1 | ||||
Refseq | XP_029123482.1 | 0.0 | auxin response factor 12 isoform X1 | ||||
Swissprot | Q258Y5 | 0.0 | ARFL_ORYSI; Auxin response factor 12 | ||||
TrEMBL | A0A2H3YVJ6 | 0.0 | A0A2H3YVJ6_PHODC; Auxin response factor | ||||
STRING | XP_008804149.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |