PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935430.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 804aa    MW: 89687.1 Da    PI: 6.1839
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935430.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.92e-23128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_010935430.1 128 FCKILTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELVARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLLAGDSVLFI--WNE 218
                     99*****************************8544444..49************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_010935430.1 219 KNQLLLGIRRA 229
                     9999****997 PP

2Auxin_resp115.93.4e-38254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka+  +++svGmRf+m fete+ss rr++Gt++ +sdldpvrWp+S+Wrs+k
  XP_010935430.1 254 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYVKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEISDLDPVRWPHSHWRSVK 337
                     79********************************87599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.11E-48113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-41121243IPR015300DNA-binding pseudobarrel domain
CDDcd100178.64E-21127228No hitNo description
PfamPF023621.1E-21128229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.506128230IPR003340B3 DNA binding domain
SMARTSM010191.0E-23128230IPR003340B3 DNA binding domain
PfamPF065073.1E-33254337IPR010525Auxin response factor
PfamPF023097.8E-8698796IPR033389AUX/IAA domain
SuperFamilySSF542772.75E-7705782No hitNo description
PROSITE profilePS5174524.21708792IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MKLSTAGLGQ QAQEGGEKRC LNSELWHACA GPLVCLPTVG TRVVYFPQGH SEQVAASTNK  60
EVEGQIPNYP NLPPQLICQL HDVTMHADVE TDEVYAQMTL QPLNPQELND AYLPAEMGII  120
SKQPTNYFCK ILTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELVA RDLHDVEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLLAGD SVLFIWNEKN QLLLGIRRAS RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LSKYVKAVFH TRISVGMRFR  300
MLFETEESSV RRYMGTITEI SDLDPVRWPH SHWRSVKVGW DESTAGERPP RVSLWEIEPL  360
TTFPMYPSLF PLRLKRPWYP GIPSFHDDGN ALMWLRGGAA DRGLQSLNFQ SPGMGPWVQQ  420
RMESTLLGHD HDQYSAMAAP ALPDTRGSDY LKQQFLHLQQ PYQLPQQFCS TGPLLQQQII  480
QQACEQQIIS PQSQNISGNL THNVLHQQLQ QSLNNQKQVQ PAQTYPESYQ IPGTNVQQQQ  540
APLPSQLCEK LEFSDSSVNF STIMTSSSVQ GMLGAAYPEG SSNVLDFARL GQSMMSEQNQ  600
QTWEPKFTMS QSTTFGNAVL LPSFHGKDGS VGTENGSADM QNHTLFGVNI DSSSLLSHAV  660
PSLRANSIDD NISTMPYASS SLQNSIYGSL EESSGVLQNA GEADPTTKTF VKVYKSGSVG  720
RSLDITRFNN YDELREELGQ MFGIKGQLED PLRSGWQLVF VDRENDVLLL GDDPWESFVN  780
NVWYIKILSP EDVHKMGKRA IEPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1641335843388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029123480.10.0auxin response factor 12 isoform X1
RefseqXP_029123481.10.0auxin response factor 12 isoform X1
RefseqXP_029123482.10.0auxin response factor 12 isoform X1
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLA0A2H3YVJ60.0A0A2H3YVJ6_PHODC; Auxin response factor
STRINGXP_008804149.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6