PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935426.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 760aa    MW: 85445 Da    PI: 4.8649
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935426.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25.1e-07117139427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C +f++ G+C  G++C+F+Hgp
  XP_010935426.1 117 VPCYYFQK-GHCLKGEKCPFMHGP 139
                     79******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.842049IPR000571Zinc finger, CCCH-type
SMARTSM003560.0022148IPR000571Zinc finger, CCCH-type
PfamPF156637.3E-122175No hitNo description
PROSITE profilePS5010310.9625177IPR000571Zinc finger, CCCH-type
SMARTSM003560.145376IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.042113140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6114138IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5114139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4118139IPR000571Zinc finger, CCCH-type
PfamPF146080.45118138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MESGGGREGI RPLTDEEEAL KRNTDCVYFL ASPLTCKKGN ECEYRHSEGA RINPRDCWYW  60
LNGNCLNPKC LFRHPPLDGL LGTPGPSSGP AQPPSQTVAA TQIPKWHAPY AGNKQNVPCY  120
YFQKGHCLKG EKCPFMHGPQ TSGNPVSQQV AKVSITPTEP PEDSWAIKDC TAQQNIPSQQ  180
NVPAQQYVPK VGVHKPKVSV NKPVQVPPAS VKPVTKAESG PSNVPTTKKS LPPHSTDDEL  240
YGMQQNQFPV SSGYAVSRPR DQQIQPSGDR PQNGREADEF LGESSPGFDV LVDDDIEESD  300
YFHNEDNFGR ASVQGGRNQN PMDEYDYHHD DYESRNTFER DRYNGVSEYD RYGEVHDAYG  360
WEPCRASSER ISERSLFEGS VSRREANYDD RDGSDLRHRL LKQRRLDGSR SAVSPDGYSE  420
PYRSDDHYIE ERDRGHHSHR SQRPIPRESS ISTRLRGRIT LPGRSSPDIA TDLRSENDRH  480
RGRPRGRLSP PRPINYQGRH HERVRRRSYE EFAADARSTG VKPTRRDDVN FLDFAGPKSL  540
AELKGAKVME NSQEPSTKST SATASLDLNK MKSTKVATEN FLSFEGPKPL SVILKRKREA  600
ASGNGGISSG GDDNNRRDVE VAKDGSVSAA LSDVQSIPPV EAKKDGSDTF TRLEEHQDRR  660
AEEEAEEEEE EGLCRREEEE SIHDSRSSAK EDVLEEDHME VDAMEDQELE NYDQRYGESD  720
YEADEGGNLK TDDDENVYQE DEDELDDEDD FAKKVGVMFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935426.10.0zinc finger CCCH domain-containing protein 32
TrEMBLA0A2H3YUW00.0A0A2H3YUW0_PHODC; zinc finger CCCH domain-containing protein 32-like
STRINGXP_008804174.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241