PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010935415.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB_related

Protein Properties

Length: 256aa MW: 28747.6 Da PI: 5.0409

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010935415.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.7	2.3e-12	159	204	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ l++ + +G g+W+ Ia+ + ++Rt+ q+ s+ qk+ XP_010935415.1 159 MPWTEEEHRLFLIGMDVHGRGDWRNIAKNFVTTRTPTQVASHAQKF 204 69******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.493	152	209	IPR017930	Myb domain
SuperFamily	SSF46689	6.43E-16	155	208	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-9	157	207	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	2.2E-14	157	208	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.6E-11	158	209	IPR009057	Homeodomain-like
Pfam	PF00249	7.8E-10	159	203	IPR001005	SANT/Myb domain
CDD	cd00167	1.61E-8	160	205	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MESFIGEEWS PPENEKFEEA VAEVDFNGQD WLEQINETLS TTKELTDHCI NFTMDLGCID 60 NGCNLMLPDI AYSNVTKDDD SGFLSMDNPL QEMNKIGSSS SNTRMAAKPV MEGDPSLSIA 120 DGIITLPCFT KPETKKLPSP MAAAEASVET IAPTSTKGMP WTEEEHRLFL IGMDVHGRGD 180 WRNIAKNFVT TRTPTQVASH AQKFFKRQLQ FKKRNRPSIH DIRNINSSLP TKIRKLSIYD 240 LIEWKKPLGI PIANNV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010935415.1	0.0	uncharacterized protein LOC105055347, partial

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP36624	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	1e-22	MYB family protein