PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010935286.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Nin-like

Protein Properties

Length: 920aa MW: 102060 Da PI: 5.9599

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010935286.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.1	8.6e-29	616	666	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sle+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ XP_010935286.1 616 EKTVSLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 666 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.609	605	686	IPR003035	RWP-RK domain
Pfam	PF02042	4.2E-25	618	666	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.18E-22	829	913	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.5E-24	830	913	No hit	No description
Pfam	PF00564	2.2E-19	833	915	IPR000270	PB1 domain
SMART	SM00666	1.0E-25	833	916	IPR000270	PB1 domain
PROSITE profile	PS51745	25.492	833	916	IPR000270	PB1 domain
CDD	cd06407	3.97E-40	834	914	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 920 aa Download sequence Send to blast
MEANSSPSRT LSDGAANLDL LDRLLSGEGW LEFPNSSDVL QSNTPNSMSP FDSLSFSPLF 60 EVSNGNSTRV LPESDNLDDT DRSVISTNPP SDESQVGNID RTHSLNSSTI GRIMYSVQSG 120 ELSTINPSPE PGTNWWIRPS SSISSVKDRF MHALSYIKET HREGNVLVQL WVPMKRGDQL 180 VLTTYGQPFL VDPNCEKLVN YREISTNYEF SAEENSGRAL GLPGRVFLGR LPEWTPDVRY 240 FDSSEFLRVG YAEYFDVRGT IALPVFEHGG RSCLGVVEVV TTTQDMNHSS ELQNICNALQ 300 AADLTSSEVL SVPHLKVSGG SYQAALPEIL EVLKTICKMH KLPLAQTWIA CIQQGKTGSR 360 HSKENYKDCV STVDAACYLN DPSMLSFHRA CSEHHLLKGQ GVAGKAFTTN EPCFSPDITA 420 SCKTEYPLSH HARMVNLKGA VAIRLRSIRS GNADFVLEFF LPPDCIGSEE QKLMLNSLSN 480 TIQQVCQTLR VMTIKELEDE AMLQVNELIP SELRYDKSGS EEGRRQNVDD VLSVEASEKE 540 TSEFLELEKD WFEGFTVTTH SNHPEVVLPA GEIFSEFKQH RQDLQNDVSN HKDSFTSDCS 600 FPVSGKATEK RRTKTEKTVS LEVLRQYFAG SLKDAAKSIG VCPTTLKRIC RQHGITRWPS 660 RKIKKVDHSL KKLQVVIDSV HGADKGIQLS SLYKEFTKAS GPNGNLSGSI TFSPVNQKDH 720 PESTHQQQDA RLGHHLSSPS LSSSSCSQCS SSSHSCSSGA KQPTQAAEFI IKQESSMEET 780 PSGIPERTNS QVDLSLPTQE TTLCIKRSSN DKSPIEHCSP GTLSSLHKDT SSWIRVKAMY 840 EAEKVRLRLQ PTWGFQDLKQ EITKRFNIGD TNSVNLKYLD DDTEWILLTC DADLQECIHV 900 YRSSGAETIK ISVQSVGMSQ

Sequence ? help Back to Top

Protein Sequence Length: 920 aa Download sequence Send to blast

MEANSSPSRT LSDGAANLDL LDRLLSGEGW LEFPNSSDVL QSNTPNSMSP FDSLSFSPLF  60
EVSNGNSTRV LPESDNLDDT DRSVISTNPP SDESQVGNID RTHSLNSSTI GRIMYSVQSG  120
ELSTINPSPE PGTNWWIRPS SSISSVKDRF MHALSYIKET HREGNVLVQL WVPMKRGDQL  180
VLTTYGQPFL VDPNCEKLVN YREISTNYEF SAEENSGRAL GLPGRVFLGR LPEWTPDVRY  240
FDSSEFLRVG YAEYFDVRGT IALPVFEHGG RSCLGVVEVV TTTQDMNHSS ELQNICNALQ  300
AADLTSSEVL SVPHLKVSGG SYQAALPEIL EVLKTICKMH KLPLAQTWIA CIQQGKTGSR  360
HSKENYKDCV STVDAACYLN DPSMLSFHRA CSEHHLLKGQ GVAGKAFTTN EPCFSPDITA  420
SCKTEYPLSH HARMVNLKGA VAIRLRSIRS GNADFVLEFF LPPDCIGSEE QKLMLNSLSN  480
TIQQVCQTLR VMTIKELEDE AMLQVNELIP SELRYDKSGS EEGRRQNVDD VLSVEASEKE  540
TSEFLELEKD WFEGFTVTTH SNHPEVVLPA GEIFSEFKQH RQDLQNDVSN HKDSFTSDCS  600
FPVSGKATEK RRTKTEKTVS LEVLRQYFAG SLKDAAKSIG VCPTTLKRIC RQHGITRWPS  660
RKIKKVDHSL KKLQVVIDSV HGADKGIQLS SLYKEFTKAS GPNGNLSGSI TFSPVNQKDH  720
PESTHQQQDA RLGHHLSSPS LSSSSCSQCS SSSHSCSSGA KQPTQAAEFI IKQESSMEET  780
PSGIPERTNS QVDLSLPTQE TTLCIKRSSN DKSPIEHCSP GTLSSLHKDT SSWIRVKAMY  840
EAEKVRLRLQ PTWGFQDLKQ EITKRFNIGD TNSVNLKYLD DDTEWILLTC DADLQECIHV  900
YRSSGAETIK ISVQSVGMSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010935286.1	0.0	protein NLP1
Refseq	XP_010935287.1	0.0	protein NLP1
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A3Q0HU00	0.0	A0A3Q0HU00_PHODC; protein NLP1-like
STRING	XP_008781315.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5554	38	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]