PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934943.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 349aa    MW: 37314.9 Da    PI: 7.0807
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934943.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-1378122147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_010934943.1  78 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 122
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-1672128IPR009057Homeodomain-like
PROSITE profilePS5129415.40873127IPR017930Myb domain
TIGRFAMsTIGR015571.6E-1876125IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-676128IPR009057Homeodomain-like
SMARTSM007175.3E-1177125IPR001005SANT/Myb domain
PfamPF002493.0E-1178122IPR001005SANT/Myb domain
CDDcd001672.30E-880123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVSINAKPAD GGNGGGAAVL FFSDPHHHHQ PPSGPPMALS GIAGGGALPA PAATAAASSS  60
SDDPSKKIRK PYTITKSRES WTEQEHDKFL EALQLFDRDW KKIEAFVGSK TVIQIRSHAQ  120
KYFLKVQKNG TTEHVPPPRP KRKAAHPYPQ KASKNAPLLP QVTASLQTPS LLEPGYALPA  180
DTSMLQNSTT SATVSSWAHS SVQPVSATHA IKDDIGPTGA VVANNCSCSS TESPSITWAT  240
CETTDHENHV PSLHVMPDFA QVYSFLGSVF DPNTSGHLQK LKEMDPIDVE TALLLMKNLS  300
INLTSPEFEP HRKLLSSNSA DTEDVKPGGA PKSLQVSESM NASFMVKGE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00560DAPTransfer from AT5G52660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934943.10.0protein REVEILLE 8 isoform X1
SwissprotQ8H0W31e-103RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2H3Y8A30.0A0A2H3Y8A3_PHODC; protein REVEILLE 5-like isoform X6
STRINGXP_008794784.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.13e-88MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]