PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010934917.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 271aa MW: 31365.4 Da PI: 8.3221 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.7 | 1e-30 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELS+LCdaeva+iifs +gklye+ XP_010934917.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSILCDAEVALIIFSGRGKLYEFG 58 79**********************************************95 PP | |||||||
2 | K-box | 92.6 | 6.7e-31 | 77 | 161 | 5 | 89 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 ++ +e+ ++++++e++kLk+++e+Lqr qRhllGedL++Ls+keLqqLe+qLe++l++ R+++++++l+q+eel+kk +++ XP_010934917.1 77 QDDTIDEHGTQNWYHEFSKLKAKYESLQRRQRHLLGEDLGTLSVKELQQLERQLESALSRTRQRRTQIMLDQMEELRKKRYKART 161 444478999**********************************************************************877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.137 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.22E-45 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.29E-33 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.6E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.0E-23 | 83 | 179 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.369 | 86 | 199 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MGRGKVELKR IENKINRQVT FSKRRNGLLK KAYELSILCD AEVALIIFSG RGKLYEFGSV 60 GISKTIERYQ SCHYASQDDT IDEHGTQNWY HEFSKLKAKY ESLQRRQRHL LGEDLGTLSV 120 KELQQLERQL ESALSRTRQR RTQIMLDQME ELRKKRYKAR TDEENPGFED LCSKLENLER 180 HLEDINRQLK NKLEVGGYSF RAIQGSLESN AMIAGNPFPL HHSQSNTMVC EPALQTGYHH 240 FFPPETAISS NSAAENNFMQ GWLFELNGHD P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
6byy_A | 1e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 1e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 1e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 1e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 140 | RQLESALSRTRQRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010934918.1 | 0.0 | MADS-box transcription factor 6 isoform X2 | ||||
Swissprot | Q8LLR1 | 1e-110 | MADS3_VITVI; Agamous-like MADS-box protein MADS3 | ||||
TrEMBL | A0MTC2 | 1e-127 | A0MTC2_CROSA; MADS-box transcription factor AGL6a | ||||
STRING | XP_008797646.1 | 1e-123 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4187 | 35 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 4e-97 | AGAMOUS-like 6 |
Publications ? help Back to Top | |||
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