PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010934908.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Protein Properties

Length: 321aa MW: 35208.1 Da PI: 9.8603

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010934908.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	96.2	2.1e-30	61	165	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 f+kv tpsdv+k++rlv+pk++ae++ ++ ++ l +ed++g+ W ++++y+++s++yv+tkGW++Fvk+++L++gD+v F + g+ + XP_010934908.1 61 FDKVVTPSDVGKLNRLVIPKQYAEKFfpldPSVADKGLSLCFEDRTGKPWHFRYSYWNSSQSYVMTKGWSRFVKDKRLDAGDTVSFCRGvGDsGR 155 89***********************999666668889*********************************************965588899 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +++++ ++r+ XP_010934908.1 156 GRFFIDWRRR 165 9999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.6E-40	54	171	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.92E-30	58	166	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.37E-27	59	146	No hit	No description
Pfam	PF02362	1.7E-27	61	165	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.875	61	166	IPR003340	B3 DNA binding domain
SMART	SM01019	7.1E-19	61	166	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MELAHGIRRG GHHRGEEDQE EALSKNPSFS PSSSTPPSFS FTWIPHAEPA PALPIEREHM 60 FDKVVTPSDV GKLNRLVIPK QYAEKFFPLD PSVADKGLSL CFEDRTGKPW HFRYSYWNSS 120 QSYVMTKGWS RFVKDKRLDA GDTVSFCRGV GDSGRGRFFI DWRRRPGSSH HRQPPLPGQP 180 MQLPFAATTT PFAGLFPPSV PAAMRNAASP GAGGDGGSYV RFRSVCPPPH VRVQVGGGSE 240 VVGLPMVLGS LPVIHGSAKP KRVRLFGVNL ECSEPEVDLG EAQRLPLAQP RPSLLQWRIG 300 ALESTVVSTG SKLHSSMDLH L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-60	56	166	3	114	B3 domain-containing transcription factor NGA1
5os9_B	3e-60	56	166	3	114	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010934908.1	0.0	B3 domain-containing protein Os03g0120900
Swissprot	Q6EU30	1e-67	Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
Swissprot	Q8LMR9	9e-69	Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBL	A0A2H3XU14	1e-147	A0A2H3XU14_PHODC; B3 domain-containing protein Os02g0683500-like
STRING	XP_008788762.1	1e-148	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	3e-66	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]