PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010934904.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 730aa MW: 81170.5 Da PI: 4.6976

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010934904.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.2	8.2e-50	9	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrFhPtdeelv+ yLk+k++g+ + e+i+e+di+k+ePwdLp k +++++ ew+fF+++d+kya+g+r+nrat++gyWkatg+d+ + XP_010934904.1 9 LPIGFRFHPTDEELVNVYLKRKISGRIRNDMEIIPEIDILKCEPWDLPdKsIIRSDDPEWFFFAPKDRKYANGNRSNRATEAGYWKATGRDRLIR 103 699*********************9877799**********96446667778*********************************** PP NAM 94 sk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 sk +++l+g+kktLvf++grapkg +t+W++heyr XP_010934904.1 104 SKaapgRQNLIGMKKTLVFHRGRAPKGIRTRWIIHEYRT 142 999988899**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-55	7	163	IPR003441	NAC domain
PROSITE profile	PS51005	56.272	9	163	IPR003441	NAC domain
Pfam	PF02365	2.3E-25	10	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence Send to blast
MMTISPGSLP IGFRFHPTDE ELVNVYLKRK ISGRIRNDME IIPEIDILKC EPWDLPDKSI 60 IRSDDPEWFF FAPKDRKYAN GNRSNRATEA GYWKATGRDR LIRSKAAPGR QNLIGMKKTL 120 VFHRGRAPKG IRTRWIIHEY RTTEREFESG DQGGYVLYRL FKKPEEKGSN SKADEMEKSG 180 FSPTPTKSSP DGTLHEEDSM EEISTPVNQK SPESGLQEEP QSLPDSVEQQ PTVIKRWLTD 240 NIHCSATCSV EPDERSCNVA ADNHDAKAGM HDVSTQYHGP HHQQIDSNGF PNFSSPMLPC 300 TDDQESPMED VDDADRDSFH EFLDAVLGNP DEYSPRASDA QKNSVAESVP RHGIWDSASF 360 RDSGTSSDID TEAGLPQEHV SLEASEWSEE PSFLLNELLQ MNSSYGYPET EPHLSAPYEN 420 ASLLPYDSTG PDVCSVDPAS ESLQYLFDSM EASNNQKNIA NNGDGLEVTG IEFRPHQLQH 480 PSDSKNISAQ QSTITSRFRL QGPVQNVSFA LAGSESSSSG DDHEDKEAMR KALQDLCDST 540 EESLTQKDTP SNEDGFEGTG IKIRTRKAHP PSLNKLSSKR GRVFGRIRLQ ASLEVGSFSA 600 IAGESSSSKD DQVDRESTTE SLQAGEHVDD NLAEFREISK PALLDKLEQL SIHDDATHSS 660 ELYQESKPLL RLRTKGTYDD ANVLKDPPSH PGISGTGSVV AYVVRLVLAV ILLLMCFGIW 720 RCINSQYVPI

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence Send to blast

MMTISPGSLP IGFRFHPTDE ELVNVYLKRK ISGRIRNDME IIPEIDILKC EPWDLPDKSI  60
IRSDDPEWFF FAPKDRKYAN GNRSNRATEA GYWKATGRDR LIRSKAAPGR QNLIGMKKTL  120
VFHRGRAPKG IRTRWIIHEY RTTEREFESG DQGGYVLYRL FKKPEEKGSN SKADEMEKSG  180
FSPTPTKSSP DGTLHEEDSM EEISTPVNQK SPESGLQEEP QSLPDSVEQQ PTVIKRWLTD  240
NIHCSATCSV EPDERSCNVA ADNHDAKAGM HDVSTQYHGP HHQQIDSNGF PNFSSPMLPC  300
TDDQESPMED VDDADRDSFH EFLDAVLGNP DEYSPRASDA QKNSVAESVP RHGIWDSASF  360
RDSGTSSDID TEAGLPQEHV SLEASEWSEE PSFLLNELLQ MNSSYGYPET EPHLSAPYEN  420
ASLLPYDSTG PDVCSVDPAS ESLQYLFDSM EASNNQKNIA NNGDGLEVTG IEFRPHQLQH  480
PSDSKNISAQ QSTITSRFRL QGPVQNVSFA LAGSESSSSG DDHEDKEAMR KALQDLCDST  540
EESLTQKDTP SNEDGFEGTG IKIRTRKAHP PSLNKLSSKR GRVFGRIRLQ ASLEVGSFSA  600
IAGESSSSKD DQVDRESTTE SLQAGEHVDD NLAEFREISK PALLDKLEQL SIHDDATHSS  660
ELYQESKPLL RLRTKGTYDD ANVLKDPPSH PGISGTGSVV AYVVRLVLAV ILLLMCFGIW  720
RCINSQYVPI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-41	8	163	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-41	8	163	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-41	8	163	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-41	8	163	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-41	8	163	19	168	NAC domain-containing protein 19
3swm_B	2e-41	8	163	19	168	NAC domain-containing protein 19
3swm_C	2e-41	8	163	19	168	NAC domain-containing protein 19
3swm_D	2e-41	8	163	19	168	NAC domain-containing protein 19
3swp_A	2e-41	8	163	19	168	NAC domain-containing protein 19
3swp_B	2e-41	8	163	19	168	NAC domain-containing protein 19
3swp_C	2e-41	8	163	19	168	NAC domain-containing protein 19
3swp_D	2e-41	8	163	19	168	NAC domain-containing protein 19
4dul_A	1e-41	8	163	16	165	NAC domain-containing protein 19
4dul_B	1e-41	8	163	16	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010934904.1	0.0	NAC domain-containing protein 14 isoform X1
TrEMBL	A0A2H3XUF4	0.0	A0A2H3XUF4_PHODC; protein NTM1-like 9 isoform X1
STRING	XP_008788721.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5172	38	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	2e-70	NAC transcription factor-like 9