PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010934840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 36773.9 Da PI: 10.3093 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.5 | 1.8e-19 | 51 | 97 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT Ed+llv+avkq+ g++Wk+Ia+ ++ gR++ qc +rwqk+l XP_010934840.1 51 KGGWTDKEDDLLVKAVKQFNGKNWKKIAELFP-GRSDVQCLHRWQKVL 97 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 62 | 1.2e-19 | 103 | 149 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++++++v+++G + W+ Ia+ ++ gR +kqc++rw+++l XP_010934840.1 103 KGTWTKEEDDRIIKLVAKHGCKKWSVIAKSLP-GRIGKQCRERWHNHL 149 799*****************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 58.5 | 1.5e-18 | 155 | 197 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ l++a++ +G++ W+ Ia+ ++ gRt++++k++w+ XP_010934840.1 155 KDAWTPEEEVTLIHAHQIYGNK-WAEIAKLLP-GRTDNSIKNHWN 197 689*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.28 | 46 | 97 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.52E-16 | 49 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-16 | 50 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-17 | 51 | 97 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-22 | 53 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.07E-14 | 54 | 97 | No hit | No description |
PROSITE profile | PS51294 | 31.266 | 98 | 153 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.79E-32 | 100 | 196 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-17 | 102 | 151 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-19 | 103 | 149 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.01E-16 | 105 | 149 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-27 | 110 | 156 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-17 | 154 | 202 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.803 | 154 | 204 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.8E-17 | 155 | 197 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.32E-13 | 157 | 197 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 157 | 204 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MVEEVKMEDG KNDRIQEISL PSCSPDSDGS CEMTPGTISG RTSGPTRRST KGGWTDKEDD 60 LLVKAVKQFN GKNWKKIAEL FPGRSDVQCL HRWQKVLNPE LVKGTWTKEE DDRIIKLVAK 120 HGCKKWSVIA KSLPGRIGKQ CRERWHNHLN PSIKKDAWTP EEEVTLIHAH QIYGNKWAEI 180 AKLLPGRTDN SIKNHWNCSV KKKLGSCLAS GIPSQPFGNP AFKLNSHQET VGSLKSHPAK 240 LGEVKSKTES YVKQTQSPVQ YCTPPVISPS HTFSPRDPIS YLRAAAKSFK DTPSIFRRRR 300 LLDLSRTHIL NGKHFSQSSN DSFGTRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-69 | 51 | 204 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-69 | 51 | 204 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 295 | 300 | FRRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}. | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010934839.1 | 0.0 | transcription factor MYB3R-5 isoform X6 | ||||
Swissprot | Q6R032 | 2e-90 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
Swissprot | Q9S7G7 | 9e-90 | MB3R1_ARATH; Transcription factor MYB3R-1 | ||||
TrEMBL | A0A2H3ZQI2 | 1e-156 | A0A2H3ZQI2_PHODC; uncharacterized protein LOC103708649 isoform X2 | ||||
TrEMBL | A0A2H3ZRC9 | 1e-155 | A0A2H3ZRC9_PHODC; transcriptional activator Myb-like isoform X1 | ||||
STRING | XP_008791902.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 8e-93 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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