PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010934813.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 290aa MW: 32404.2 Da PI: 7.0625 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.6 | 3.3e-14 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d+ ++G +W++++ + g+ R +k+c++rw +yl XP_010934813.1 15 KGLWSPEEDQKLRDYMLKHGHSCWSAVPVKAGLQRKGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.7e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE+e + ++ ++lG++ W++Ia +++ gRt++++k++w++yl XP_010934813.1 68 RGFFSQEEEETIMNLQAKLGNK-WSRIAMHLP-GRTDNEVKNYWNSYL 113 789*******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.162 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.48E-27 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-10 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-12 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.88E-9 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.787 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-15 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.12E-12 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MGCRTCETPK VNYRKGLWSP EEDQKLRDYM LKHGHSCWSA VPVKAGLQRK GKSCRLRWIN 60 YLRPGLKRGF FSQEEEETIM NLQAKLGNKW SRIAMHLPGR TDNEVKNYWN SYLKKKVINA 120 QGSDPHGSAT KSPDSTNQSQ VTHAETIYKI SSSESIEPPG SSTRDLSPSM MHRMEFGSFK 180 GASHQHFPKV FADWLSVDQV IDQSSGSFVH ANTPWNSNNS NIDEVLKPGS SQVVADSKSD 240 LLSGYGDSGI YGELQAQLEP ASQTLGDEFF DLLSLGEISV SLDTNHDVLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-24 | 15 | 117 | 7 | 108 | B-MYB |
1h8a_C | 1e-23 | 9 | 117 | 23 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010934813.1 | 0.0 | transcription factor LAF1 | ||||
Swissprot | Q8LPH6 | 1e-53 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A2H3Z1N2 | 0.0 | A0A2H3Z1N2_PHODC; transcription repressor MYB6 | ||||
STRING | XP_008780142.1 | 1e-154 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 1e-56 | myb domain protein 19 |