PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934696.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 452aa    MW: 50067.1 Da    PI: 6.4002
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934696.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.7e-18122168148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd ll+++v+q+G g W+ Ia+++  gR +kqc++rw+++l
   XP_010934696.1 122 KGQWTAEEDSLLIRLVEQHGVGKWSQIAKKLV-GRIGKQCRERWHNHL 168
                      799*****************************.*************97 PP
2Myb_DNA-binding59.29.1e-19174216145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+ llv+a+k+ G++ W+ Ia+ ++ gRt++++k++w+
   XP_010934696.1 174 KNPWSEEEERLLVEAHKKVGNR-WAEIAKQIP-GRTENSIKNHWN 216
                      689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.152117172IPR017930Myb domain
SuperFamilySSF466891.12E-32120215IPR009057Homeodomain-like
SMARTSM007178.3E-18121170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-28123176IPR009057Homeodomain-like
PfamPF139215.2E-20125185No hitNo description
CDDcd001671.33E-16125168No hitNo description
SMARTSM007173.2E-18173221IPR001005SANT/Myb domain
PROSITE profilePS5129422.459173223IPR017930Myb domain
CDDcd001671.39E-14176216No hitNo description
Gene3DG3DSA:1.10.10.601.7E-22177221IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MEEVDKISNE LSEKGSYCLR PLTPLERFLL GERELHVSKK PTPREANKVL FSSDANVCCG  60
DPLGATGVLP TGVLLDESGF CEGFIGCGDK EVGEGLKCAE GKGRTSISSS SRSYAADIKL  120
VKGQWTAEED SLLIRLVEQH GVGKWSQIAK KLVGRIGKQC RERWHNHLRP DIKKNPWSEE  180
EERLLVEAHK KVGNRWAEIA KQIPGRTENS IKNHWNATMR RQNSKKRTKK KTSQAERPQP  240
SILLEYIRSN TSNETSTTKT TPSTAPPNQL QTTFPHTSEP MSAYSFSAST TRHMEGETLA  300
MHNFIDISYG QQLASESALD NGFHVKDIQE PHMLESLEFI GIDGGDDEFM GMDGHTFLAT  360
PPAPNFLYEK ASPPTASHDT PMISGSSTHA DAYLAYLLNG APLTSLSVVE SNTSEAVAND  420
VKREMDLLEM ISSSRFSSSQ RSYSDSSFAY LY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-481202222104C-Myb DNA-Binding Domain
1msf_C7e-481202222104C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813555.10.0transcription factor MYB119-like
TrEMBLA0A2H3ZHD40.0A0A2H3ZHD4_PHODC; transcription factor MYB119-like
STRINGXP_008813555.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.18e-59myb domain protein 98