PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934650.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 245aa    MW: 25682.8 Da    PI: 8.9636
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934650.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19105155255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  XP_010934650.1 105 HYRGVRRRP-WGKYAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAYRIRG 155
                     8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.39E-30104163No hitNo description
Gene3DG3DSA:3.30.730.104.8E-32104163IPR001471AP2/ERF domain
PROSITE profilePS5103224.54105163IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-23105164IPR016177DNA-binding domain
SMARTSM003805.0E-38105169IPR001471AP2/ERF domain
PfamPF008474.9E-13105155IPR001471AP2/ERF domain
PRINTSPR003675.2E-11106117IPR001471AP2/ERF domain
PRINTSPR003675.2E-11129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MYAQWPIPDA ADVALLESIR HHLLDDSTPF DYPSSLPPST ATAAAAASGG GGGGLPFHPE  60
DSDDMLLHAL IQHAFRPPAV AVKMEEAPPT PPAVELPAAP SRGKHYRGVR RRPWGKYAAE  120
IRDPAKNGAR VWLGTFETAE DAALAYDRAA YRIRGSRALL NFPLLVGSHD AAPTPAKRAS  180
SELPGNPSSS PKRRKRGAAS AGPVCSPAPA PVQVSSPAQA GLGSGSSGPQ SQQTSVSMDQ  240
LWVSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-38101168168ATERF1
3gcc_A6e-38101168168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934650.11e-175ethylene-responsive transcription factor 1A
SwissprotO803381e-48EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLA0A2H3Z7U61e-138A0A2H3Z7U6_PHODC; ethylene-responsive transcription factor 2-like
STRINGXP_008809462.11e-139(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.14e-33ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]