PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010934641.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 297aa MW: 32219.4 Da PI: 10.2308 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.8 | 2.9e-14 | 96 | 140 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + k+lG+g+W+ I+r + ++Rt+ q+ s+ qky XP_010934641.1 96 PWTEEEHRTFLAGLKMLGKGDWRGISRNFVTTRTPTQVASHAQKY 140 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.943 | 89 | 145 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.35E-17 | 91 | 146 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-17 | 92 | 144 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.2E-10 | 93 | 143 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-11 | 95 | 139 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-11 | 96 | 140 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.63E-9 | 96 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MEGGRIRQDS RSEKRLKLFG VTILGDGGGR KEAQDVVRKE AAEEVMRKSK SMGNLAACGS 60 SPAAESGAGD NGYLSDGGLV QNSTRRGGRE RKRGVPWTEE EHRTFLAGLK MLGKGDWRGI 120 SRNFVTTRTP TQVASHAQKY FLRQSNPTKK KRRSSLFDVV ISDPAPESET SALPLSLKKS 180 CVVTEEVNHH LQDSSLQVRI SGNSKDQVVP TLFLTPPLDI SNQAFTSFQA SFTACAPDFL 240 KVSLSPSIQL HPHYPTQSTA ASPPPEKGNL ELSIAPPQQH SLTKLSSPKA AETISVI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 152 | KKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008808102.1 | 2e-92 | transcription factor MYBS2-like | ||||
Refseq | XP_010919736.1 | 2e-92 | transcription factor KUA1 | ||||
TrEMBL | A0A2H3Z4L2 | 4e-91 | A0A2H3Z4L2_PHODC; transcription factor MYBS2-like | ||||
STRING | XP_008808102.1 | 7e-92 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5858 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 2e-40 | MYB_related family protein |