PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934589.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 640aa    MW: 74272.8 Da    PI: 7.0435
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934589.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.51.1e-2331118190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY++YAk++GFs+rk++ +++  +g i  r +vC keg+r ++k++  + ++++  +rtgC a l++k +++gk++vt++e +HnH+l+
  XP_010934589.1  31 QFYDNYAKRIGFSIRKNRLNRR-ASGVISLRVYVCHKEGFRGNKKEE-WEVKNPKLYERTGCLAALTLKITNNGKYRVTDFEAKHNHPLV 118
                     6*****************9997.9999****************9999.99999***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2031118IPR004330FAR1 DNA binding domain
PfamPF105511.4E-25236328IPR018289MULE transposase domain
PROSITE profilePS5096611.066515551IPR007527Zinc finger, SWIM-type
PfamPF044343.1E-6518548IPR007527Zinc finger, SWIM-type
SMARTSM005750.0025526553IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MLEPNPLKDG SDDSWVPKVG MEFESEMEAY QFYDNYAKRI GFSIRKNRLN RRASGVISLR  60
VYVCHKEGFR GNKKEEWEVK NPKLYERTGC LAALTLKITN NGKYRVTDFE AKHNHPLVIP  120
NKAHMIKWRR ISKDRGVLAE DSRMIPRADD EVMNGHAGDH QHFINPSLTY KNYLQSKRAS  180
AVLPGDAGAA LQYVQERQID DPSFFYAVQL DKEDRVANIF WADGKSIIDY DYFGDVMCFD  240
TTYRSNNYGR PFAQFIGVNH HMQTVFFGAA LLYNETLESF KWMFETLKAA MSGKQPKVIW  300
IEQSTEISDA IAAVWPGTVC HFSMWHVYHD AAKHLSFAFQ GSKTFALDFS KCVYEIEEEE  360
EFQSLWKEML EKYDLKDNQW LAKLYEDREK WALPYSRHIF CADMKSTLRK EDLSTELKQW  420
LCPELDLLQF LKHYEKAIDD RRHAELQADF QACQISPTIP PTRMLKQAAN VYTPEVFKLF  480
QREFEMSMDC LVYTGGELGP IADYKVAAEG EPTEYIVRVD ISDGTLICSC KKFEFMGIQC  540
RHVLKVLDIV NIKELPQRYI LKRWRKDAKA GSMRDTCGFA FLGDSTSSKA KRYGSLCRIF  600
NKIAARAAES LEAYTLIEGH LDQLMDHVYQ IMQNKPFEKH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934589.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_010934590.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2H3ZUX30.0A0A2H3ZUX3_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_008799178.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-129FAR1-related sequence 5