PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934526.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 951aa    MW: 105660 Da    PI: 6.1552
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934526.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23145246199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F   ++++
  XP_010934526.1 145 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI--RDEK 236
                     89*********************999*****9555555.49************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++v+r+
  XP_010934526.1 237 SQLLLGVRRA 246
                     7789999997 PP
2Auxin_resp120.41.4e-39271353183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPra++seF++++ k++ka +++vs+GmRf m+fete+ss+rr++Gt+vg++d+dp+rWpnSkWr+L+
  XP_010934526.1 271 AAHAAASRSPFTVYYNPRACPSEFIIPIGKYHKAAYTQVSIGMRFGMMFETEESSKRRYMGTIVGINDCDPLRWPNSKWRNLQ 353
                     79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.54E-46133274IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-41138259IPR015300DNA-binding pseudobarrel domain
CDDcd100179.37E-21144245No hitNo description
PROSITE profilePS5086312.717145247IPR003340B3 DNA binding domain
PfamPF023623.2E-21145246IPR003340B3 DNA binding domain
SMARTSM010198.8E-24145247IPR003340B3 DNA binding domain
PfamPF065071.8E-35271353IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 951 aa     Download sequence    Send to blast
MTSVQEQVKT SGLNNAASLL DEMKLLGEVQ SKQAARKVIN SELWHACAGP LVSLPQPGSL  60
VYYFPQGHSE QVTASTRKAA NSHIPNYPNL PSQLMCQVHN VTLHADKDSD EIYAQITLQP  120
VNTESDVFPI PDLGHTKSKH PTEFFCKNLT ASDTSTHGGF SVPRRAAEKL FPQLDYSMQP  180
PNQELIVRDL HDNVWTFRHI YRGQPKRHLL TTGWSLFVGA KRLKAGDSVL FIRDEKSQLL  240
LGVRRANRQQ TALPSSVLSA DSMHIGVLAA AAHAAASRSP FTVYYNPRAC PSEFIIPIGK  300
YHKAAYTQVS IGMRFGMMFE TEESSKRRYM GTIVGINDCD PLRWPNSKWR NLQVEWDEHG  360
YGERPDRVSL WEIETPESLF VFPTPKRQCL PGFVVPGMEL GLANMSTLLK DPENVNGDLR  420
PLVSAFGTEQ LIKLLHKPQN PGLGNQLGCH QSIYASILQN IKTDDISRTF SSALPFCMVR  480
NPVHQEELVN KPPMQQKSQF APVQQQTLPS ENKSLQSQES QHCRLHNGVN LDSVSWTRVK  540
PQELCKKEPH LEQNCLDQCA SDEDRISISR SESALLNETV HQKRDTASVA SRNQVVTQSD  600
NIIKAPLQQL PMEHLNALSR NENGENSTCS LNHENLGSQV HINQELQIKG HGDPPTIQQQ  660
LEPISIQRPR LETTHSPDKS DMNNLQLHQG YPSPFLNNED WMLQSSCYQP FNDIKTPEFL  720
DTAGRPDSLF LSASENVISA STDISSIVNP PTFDPIETFQ FSGTSDSGTP CLATFIPEFL  780
STPELNALHD EQLAQGILSS EVHNLQVFEE ATVLQSISNS CGRRDLSEES YNQSETFSNV  840
QFEASTGNMN ISPYYPSKAI DGSNIMGSSK FHVLSQSLVG SLTSNQDLQS QITSTSLADS  900
QLYSLQDIPD SSGGASSGSI DANEYSLNRG SRKQISPQPL RTYTKGICQL C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.013785392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934525.10.0auxin response factor 11
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLA0A199W3380.0A0A199W338_ANACO; Auxin response factor
STRINGOS04T0664400-010.0(Oryza sativa)
STRINGORGLA04G0248600.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]