PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010934429.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 25214 Da PI: 4.9666 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.6e-18 | 42 | 93 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr++ grWv+e+r+p +k+ r++lg+f tae+Aa+a++ a+ +l+g XP_010934429.1 42 PVYKGVRRRGPAGRWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAAMALRG 93 68****************9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.2E-14 | 42 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-20 | 43 | 103 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.221 | 43 | 101 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-26 | 43 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-30 | 43 | 103 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.76E-27 | 44 | 103 | No hit | No description |
PRINTS | PR00367 | 3.1E-5 | 44 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-5 | 67 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEYFGSDSSS PSTSAEYEYA TVSSAPPKRP AGRTKFRETR HPVYKGVRRR GPAGRWVCEV 60 REPNKKSRIW LGTFPTAEMA ARAHDVAAMA LRGRSACLNF ADSAWLLPVL PRFSSTKDIQ 120 RAAVEAAEAF RPSTEPDNVG TSGTAAAQME SSSEGAAMPL QPSEGTVGGD SDHGVDAMFF 180 DDMELGMHGY YYASMAEALL VEPPSASAVA VAGWGNGNWD EVENGADVSL WSHSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-13 | 41 | 100 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010934429.1 | 1e-173 | dehydration-responsive element-binding protein 1C | ||||
TrEMBL | A0A2H3YX00 | 1e-140 | A0A2H3YX00_PHODC; dehydration-responsive element-binding protein 1C-like | ||||
STRING | XP_008804750.1 | 1e-141 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 4e-46 | C-repeat/DRE binding factor 2 |