PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934336.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 706aa    MW: 76767.8 Da    PI: 6.8475
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934336.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23125226199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +
  XP_010934336.1 125 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAE 215
                     89****************************996555555..8999*********************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  XP_010934336.1 216 NGDLCVGIRRA 226
                     8999****997 PP
2Auxin_resp114.87.8e-38295378183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+++++Fe +Y+Pra+t+eF+vk++ v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  XP_010934336.1 295 AATLAANGQPFEAIYYPRAGTPEFCVKAAAVKAAMRIQWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 378
                     68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-37117229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.11E-28121231IPR015300DNA-binding pseudobarrel domain
CDDcd100174.40E-21124225No hitNo description
SMARTSM010196.3E-22125227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.999125227IPR003340B3 DNA binding domain
PfamPF023628.7E-22125226IPR003340B3 DNA binding domain
PfamPF065071.1E-32295378IPR010525Auxin response factor
PROSITE profilePS5174519.234620700IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MITLSTEPVK ESMKDADKCL DSQLWHACAG GMVQMPAVNS KVYYFPQGHA EHAQGIVDFG  60
SFPRVPAFIL CRVTAVKFMA DPETDEVFAK IQMVPVRSNE PDSGDDGGMG LGSNGADVQE  120
KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSADP PVQTVLAKDV HGEVWKFRHI  180
YRGTPRRHLL TTGWSTFVNQ KKLVAGDSIV FLRAENGDLC VGIRRAKRGV GGGHESPSGW  240
NPPTGNCVSA YGGFSVFLRE EENKLMRSNG NGCNLDSGGN MRGRGRVRAD SVIEAATLAA  300
NGQPFEAIYY PRAGTPEFCV KAAAVKAAMR IQWCPGMRFK MAFETEDSSR ISWFMGTISS  360
VQVADPIRWP NSPWRLLQVT WDEPDLLQNV KRVSPWLVEL VSNMPAIHLT PFSPPRKKLC  420
IPQRPDFPIE GQLPTPAFPR NPFGPGSSPL CCFPDSTPAG IQGARHAQFG LSLSDLRLNK  480
LQPGLFHAGL HHLDQATAHS RIPTGLIFGN PAIHDNVSCL LTIGNPSQGT KKLCNGRSPQ  540
LVLFGQPILT EQQISLSNSG DTVSPGVTGN SSLDGNPERT TNVSDGSGSA VHQNGLAENS  600
SCDGFPWYRD RQASELGLET GHCKVFMESE DVGRTLDLSV LGSYEELYGR LADMFGIDKS  660
EMMSHVLYRD AVGAVKQTGD EPFSEFMKTA RRLTILTDSG SDNVGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A8e-731939918353Auxin response factor 1
4ldy_B8e-731939918353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934336.20.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2H3XKR60.0A0A2H3XKR6_PHODC; Auxin response factor
STRINGXP_008785274.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]