PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010934316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 246aa MW: 27985.3 Da PI: 6.6784 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168 | 3.3e-52 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF P+deelv++yL kkv+++++++ ++ evd++++ePw+Lp +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+++++ XP_010934316.1 10 LPPGFRFYPSDEELVCHYLYKKVSNERISE-GTLVEVDLHTHEPWELPDVAKLSANEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDRTIHDP 103 79*************************999.88***************87788999**************************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ vg++ktLvfy+grap+g+k+ Wvmhe+rle XP_010934316.1 104 sSRAIVGMRKTLVFYQGRAPNGVKSGWVMHEFRLE 138 66677***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-60 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.432 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-28 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MGLRDIESTL PPGFRFYPSD EELVCHYLYK KVSNERISEG TLVEVDLHTH EPWELPDVAK 60 LSANEWYFFS FRDRKYATGS RTNRATKTGY WKATGKDRTI HDPSSRAIVG MRKTLVFYQG 120 RAPNGVKSGW VMHEFRLETP KSTPKESWVL CRVFHKRKGE TEQDNIGSFS PTWGPSSSQV 180 DQTSSSLPAV PHQHDSSSNP LLNLALLHCN LLDFPQEVGM SSRGGDEYGF LLDMGLEDHD 240 MREGGW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 8e-51 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swm_B | 8e-51 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swm_C | 8e-51 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swm_D | 8e-51 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swp_A | 8e-51 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swp_B | 8e-51 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swp_C | 8e-51 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swp_D | 8e-51 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010934316.3 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-61 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2H3XKQ6 | 1e-152 | A0A2H3XKQ6_PHODC; NAC domain-containing protein 21/22-like | ||||
STRING | XP_008785238.1 | 1e-152 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 1e-80 | NAC domain containing protein 74 |