PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010934130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 337aa MW: 37328.5 Da PI: 6.26 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.9 | 2.6e-14 | 38 | 83 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde+l+++v+++G+++W++I ++ + Rt+k+c++rw + XP_010934130.1 38 KGPWMAEEDEILIEYVRKHGPRDWSSIRSKGLLPRTGKSCRLRWVN 83 79*************************8876677**********87 PP | |||||||
2 | Myb_DNA-binding | 46.8 | 7e-15 | 94 | 134 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++eE+ + +d+ +q+G++ W++Ia +++ gRt++++k++w XP_010934130.1 94 KFSPEEERIVIDLQAQFGNK-WARIATYLP-GRTDNDVKNFWS 134 79******************.*********.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.667 | 33 | 85 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 36 | 86 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.88E-28 | 36 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-12 | 37 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-13 | 38 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.52E-13 | 40 | 85 | No hit | No description |
PROSITE profile | PS51294 | 21.02 | 86 | 141 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-19 | 87 | 139 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-13 | 91 | 139 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.66E-11 | 94 | 133 | No hit | No description |
Pfam | PF00249 | 5.9E-13 | 94 | 134 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MQGSGGGSQC TATSSNHISS GGKTNGRAEG GGGMVMRKGP WMAEEDEILI EYVRKHGPRD 60 WSSIRSKGLL PRTGKSCRLR WVNKLKPDLK TGCKFSPEEE RIVIDLQAQF GNKWARIATY 120 LPGRTDNDVK NFWSTRQKRL ARILRTPLPS RSSKNHGKVP ISSHEVAHLE GPSLDLILLE 180 GDSSNGQCSQ AASKMAQMPD IMNPVPLNLD TALPLLEPAM EKEPRLSNNP LPPLLLSFDR 240 LPHPLIDLPL LQEDASELLP SYRDVSFPDE FACLEPCPCM PPPQGLPFFG LDAEQNGITK 300 VDKYPRTPDF FEDLPSDMFD YLEQPPPPPP PPSSTSW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-27 | 36 | 139 | 25 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010934130.3 | 0.0 | probable transcription factor MYB58 | ||||
Swissprot | Q0JB89 | 2e-81 | MYB58_ORYSJ; Probable transcription factor MYB58 | ||||
TrEMBL | A0A2H3X4N4 | 1e-143 | A0A2H3X4N4_PHODC; probable transcription factor MYB58 | ||||
STRING | XP_008807969.1 | 1e-172 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5700 | 33 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 3e-63 | MYB family protein |
Publications ? help Back to Top | |||
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