PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934098.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SRS
Protein Properties Length: 336aa    MW: 34949.6 Da    PI: 7.7897
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934098.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702222.49.4e-69982513153
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstkls 92 
                      g++sCqdCGnqakkdC h RCRtCCksrgf+C thvkstWvpaakrrerqqqla+as++++ ++     + + skr+re   +  +a+ +t +s
  XP_010934098.1  98 GGGKSCQDCGNQAKKDCPHLRCRTCCKSRGFQCPTHVKSTWVPAAKRRERQQQLASASQSHSLRSaavgvSGEPSKRPREICPRLPTAI-ATDTS 191
                     5788**************************************************99988776665678888899999999866665555.55556 PP

          DUF702  93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                     s+     +e+ s+P+evss+avfrcvrvs +d++e+e+aYqta+sigGhvfkGiLydqG++
  XP_010934098.1 192 SGG-GGGMEAGSFPAEVSSAAVFRCVRVSPMDEAEDEFAYQTAISIGGHVFKGILYDQGPD 251
                     664.558999*************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.0E-66100251IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.6E-27102144IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.5E-25203250IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAGFSLGGSH RQGGEEEEQG GIPPENLFLY SGSGARSEEI PYTRGFELWQ QQQQIQRHQQ  60
HFYPSSALLS FSDEPPGHPP QSGVRGGGGG GGRMSGGGGG KSCQDCGNQA KKDCPHLRCR  120
TCCKSRGFQC PTHVKSTWVP AAKRRERQQQ LASASQSHSL RSAAVGVSGE PSKRPREICP  180
RLPTAIATDT SSGGGGGMEA GSFPAEVSSA AVFRCVRVSP MDEAEDEFAY QTAISIGGHV  240
FKGILYDQGP DGAPFPTTTT PRHIHHGESS SSSSAAAAIT TTAAALSTGL AASTSATAGT  300
TAAASTGFLD PSSLYPAPLS AFMAGTQFFP HHPRPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18492RGGGGGGGR
29098GGRMSGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934098.10.0protein SHI RELATED SEQUENCE 1-like isoform X2
SwissprotQ9XGX07e-70SHI_ARATH; Protein SHORT INTERNODES
TrEMBLA0A3Q0HVX01e-139A0A3Q0HVX0_PHODC; protein SHORT INTERNODES-like
STRINGXP_008783767.11e-139(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.16e-50Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Islam MA, et al.
    Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
    PLoS ONE, 2013. 8(1): p. e53377
    [PMID:23308204]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    An Evolutionary Framework for Carpel Developmental Control Genes.
    Mol. Biol. Evol., 2017. 34(2): p. 330-348
    [PMID:28049761]
  3. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]