PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010934009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 214aa MW: 24395.8 Da PI: 7.7928 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95 | 3.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien + rqvtfskRrng+lKKA+ELSvLCdaevavi+fs++gklye+ss XP_010934009.1 9 KLIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIVFSPRGKLYEFSS 59 569**********************************************96 PP | |||||||
2 | K-box | 73.5 | 6.2e-25 | 78 | 167 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++ +++++ e+a + ++ie+L+ ++R+llGe+Les+s +eL+++e ++e+sl ++R kKn+ll eqi +l+++e+ l een Lr+k XP_010934009.1 78 NNNEVTQQWKFEAASMSRKIESLEVSKRKLLGENLESCSAEELHEIEGKIEQSLCHVRGKKNQLLEEQIATLKEQEQTLMEENALLREKC 167 5667799********************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.048 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.2E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-33 | 3 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.41E-42 | 3 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-27 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.0E-26 | 81 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.261 | 83 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MVRGKTEMKL IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVAVIVFSP RGKLYEFSST 60 SMEKTIDRYR RHAKSGINNN EVTQQWKFEA ASMSRKIESL EVSKRKLLGE NLESCSAEEL 120 HEIEGKIEQS LCHVRGKKNQ LLEEQIATLK EQEQTLMEEN ALLREKCKLQ SQLRPAAAPE 180 ETVPCSQDGE NMEVETELYI GWPGRGRTNC RSQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-18 | 1 | 72 | 1 | 72 | MEF2C |
5f28_B | 9e-18 | 1 | 72 | 1 | 72 | MEF2C |
5f28_C | 9e-18 | 1 | 72 | 1 | 72 | MEF2C |
5f28_D | 9e-18 | 1 | 72 | 1 | 72 | MEF2C |
6byy_A | 9e-18 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 9e-18 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 9e-18 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 9e-18 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001291998.1 | 1e-156 | MADS-box transcription factor 50-like | ||||
Refseq | XP_010934010.1 | 1e-156 | MADS-box transcription factor 50-like isoform X4 | ||||
Refseq | XP_010934012.1 | 1e-156 | MADS-box transcription factor 50-like isoform X4 | ||||
Refseq | XP_029122981.1 | 1e-156 | MADS-box transcription factor 50-like isoform X4 | ||||
Swissprot | Q9XJ60 | 4e-82 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | Q9SDT0 | 1e-155 | Q9SDT0_ELAGV; Agamous-like MADS box protein OPMADS1 | ||||
STRING | XP_008777520.1 | 1e-129 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 1e-71 | AGAMOUS-like 19 |
Link Out ? help Back to Top | |
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Entrez Gene | 105054231 |