PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010933996.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TALE | ||||||||
Protein Properties | Length: 167aa MW: 19499 Da PI: 6.2889 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.4 | 4.8e-08 | 116 | 149 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + XP_010933996.1 116 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 149 469*****************************87 PP | |||||||
2 | ELK | 27.4 | 7.6e-10 | 70 | 91 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ XP_010933996.1 70 ELKIELKQGFRSRIEDVREEIL 91 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 9.184 | 70 | 90 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.758 | 90 | 153 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.63E-16 | 92 | 156 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.6E-11 | 92 | 157 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.27E-11 | 93 | 154 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-26 | 97 | 156 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.0E-18 | 110 | 149 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MACREIEQSL QDLTGVTLEE GTGATMSDDD DELQLECPLD MSVDGHDMMG FGPLLPTESE 60 RSLMERVRQE LKIELKQGFR SRIEDVREEI LRKRRAGKLP GDTTSVLKQW WQQHSKWPYP 120 TEDDKAKLVE ETGLQLKQIN NWFINQRKRN WHNNSQSATT LKSKRKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-13 | 93 | 149 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 166 | RKRNWHNNSQSATTLKSKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010933995.1 | 1e-120 | homeobox protein knotted-1-like 3 | ||||
Swissprot | Q94LW3 | 1e-106 | KNOS3_ORYSJ; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A2H3Z216 | 1e-113 | A0A2H3Z216_PHODC; homeobox protein knotted-1-like 3 | ||||
STRING | XP_008807225.1 | 1e-114 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-100 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |