PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933995.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 305aa    MW: 34379.9 Da    PI: 6.0912
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933995.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-072542872154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp+++++++L +++gL+ +q+ +WF N+R +
  XP_010933995.1 254 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 287
                     469*****************************87 PP
2ELK26.31.7e-09208229122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK +L++++++++ ++++E++
  XP_010933995.1 208 ELKIELKQGFRSRIEDVREEIL 229
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.9E-154387IPR005540KNOX1
PfamPF037901.8E-134586IPR005540KNOX1
SMARTSM012563.3E-2298153IPR005541KNOX2
PfamPF037911.5E-17102152IPR005541KNOX2
PROSITE profilePS512139.184208228IPR005539ELK domain
PROSITE profilePS5007111.758228291IPR001356Homeobox domain
SuperFamilySSF466895.56E-16230294IPR009057Homeodomain-like
SMARTSM003897.6E-11230295IPR001356Homeobox domain
CDDcd000863.50E-11231292No hitNo description
Gene3DG3DSA:1.10.10.602.9E-25235294IPR009057Homeodomain-like
PfamPF059201.0E-17248287IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MMQGDQGELG MEMGIGGGGG GGECSSSSAA AAAAMAVEEE QRQLLKAEIA VHPLWEQVVS  60
AHVGCLRVAT PIDHLPLIDA QLANSHHLLR SYAARHRPFL SPQDKHDLDA FLAQYLLVLC  120
SFREQLQQHV RVHAVEAVMA CREIEQSLQD LTGVTLEEGT GATMSDDDDE LQLECPLDMS  180
VDGHDMMGFG PLLPTESERS LMERVRQELK IELKQGFRSR IEDVREEILR KRRAGKLPGD  240
TTSVLKQWWQ QHSKWPYPTE DDKAKLVEET GLQLKQINNW FINQRKRNWH NNSQSATTLK  300
SKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284304RKRNWHNNSQSATTLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933995.10.0homeobox protein knotted-1-like 3
SwissprotQ94LW31e-170KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLM0RWS40.0M0RWS4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P03660_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-152KNOTTED-like homeobox of Arabidopsis thaliana 7