PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010933923.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GRF | ||||||||
Protein Properties | Length: 260aa MW: 27619.2 Da PI: 9.378 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 83.1 | 2.4e-26 | 129 | 173 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRCsr+v++++k+CErH+hrgr+rsrk++e+ XP_010933923.1 129 EPEPGRCRRTDGKKWRCSRDVVPDQKYCERHMHRGRNRSRKPVEA 173 69****************************************997 PP | |||||||
2 | QLQ | 61.2 | 2.8e-21 | 64 | 99 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFT +Qlq+L++Q+l+yKy++a++PvP +L+++i+k XP_010933923.1 64 AFTFMQLQELEHQALIYKYMVAGVPVPLHLVLPIWK 99 8*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.2E-9 | 63 | 99 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.8E-15 | 64 | 98 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.269 | 64 | 99 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 26.499 | 129 | 173 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.0E-22 | 130 | 172 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MAEEQNPAPP PQEEQQQHSL LPPTSKIPRL SSDASGVVTM AAPSPLGLGL GLRLGLGGGY 60 SRPAFTFMQL QELEHQALIY KYMVAGVPVP LHLVLPIWKS VAASSYGPHH YPSFMGYGSL 120 CFDYRNSMEP EPGRCRRTDG KKWRCSRDVV PDQKYCERHM HRGRNRSRKP VEAGAGATAA 180 AASTATTTLQ VEANNNGSNT IPTTTYLSIA IPSGGGLHLM PTTNSSSSSS GGSNNVSPPR 240 LGFSPTSVLQ GGTACKTGPS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010933923.1 | 0.0 | growth-regulating factor 10 | ||||
Swissprot | Q6EPP9 | 9e-67 | GRF10_ORYSJ; Growth-regulating factor 10 | ||||
TrEMBL | A0A2H3YT92 | 1e-124 | A0A2H3YT92_PHODC; growth-regulating factor 10-like | ||||
STRING | XP_008803298.1 | 1e-125 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6221 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 1e-38 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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