PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010933907.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TCP | ||||||||
Protein Properties | Length: 347aa MW: 36029.7 Da PI: 7.0662 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.6 | 1.6e-36 | 68 | 157 | 7 | 89 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......k 89 r++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlq a+pai+++tgt++ +a ++ ++ + ++++s + XP_010933907.1 68 RTKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQHAEPAIIAATGTGTVPAIATnVGGTLKIPTQAPSTApvtstsT 157 9**********************************************************7777744321112222222111112221111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-29 | 69 | 148 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.497 | 69 | 123 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MDSQKQEKEE DDDRRRTDLR MAGGGGGGGG GTAVPPPAAM PVHRLIIPKP EPIEMMSGFQ 60 ILRRPTGRTK DRHTKVEGRG RRIRMPAACA ARIFQLTREL GHKSDGETIR WLLQHAEPAI 120 IAATGTGTVP AIATNVGGTL KIPTQAPSTA PVTSTSTPAT DAAGEAGRKR RRKLQPSRAA 180 GAGAAAAAAA AYYPVQDPLL PGGGAISIST GLAPIGAAQG MVPMWAATAG GRLIPPGALW 240 MIPPPSAMAG PSSQPQLWTF PQGPQIINLA AARPIPAVAT PTAAEPPSST TAGGCSTASA 300 LSAGEDKAEL LLMGESGEQR HRQEQNQEQK ENEEVEEEEL SESSPED |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 173 | GRKRRRKL |
2 | 166 | 174 | GRKRRRKLQ |
3 | 167 | 171 | RKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00635 | PBM | Transfer from PK14653.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010933907.1 | 0.0 | transcription factor PCF2 | ||||
Swissprot | A2YXQ1 | 3e-75 | PCF2_ORYSI; Transcription factor PCF2 | ||||
Swissprot | Q6ZBH6 | 3e-75 | PCF2_ORYSJ; Transcription factor PCF2 | ||||
TrEMBL | A0A2H3X0J7 | 0.0 | A0A2H3X0J7_PHODC; transcription factor PCF2-like | ||||
STRING | XP_008776516.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3912 | 31 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 3e-47 | TCP family protein |
Publications ? help Back to Top | |||
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