PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933869.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 813aa    MW: 87363.8 Da    PI: 5.9203
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933869.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.51.7e-21125180156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L+ rqVk+WFqNrR+++k
  XP_010933869.1 125 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLNLESRQVKFWFQNRRTQMK 180
                     688999***********************************************999 PP
2START189.71.4e-593335581206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++elvk+a+ +ep+Wv s     e ++ +e+ ++f++  +     + +ea r++g+v+ ++  lve+l+d + +W  +++    + +t+
  XP_010933869.1 333 ELALAAMDELVKMAQMDEPLWVPSLegvkETLDDEEYERIFPRCIGmkpvgFVSEATRETGLVIINSSALVETLMDAA-RWADMFPcmiaRSTTT 426
                     5899*********************9**999**********999889*******************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwveh 169
                     evissg      g+lqlm+aelq+lsplv+ R++ f+R+++q  +g w++vdvS+d  +++++     +++++lpSg+++++++ng+skvtwveh
  XP_010933869.1 427 EVISSGmggtrnGTLQLMYAELQVLSPLVSvREVNFLRFCKQIAEGAWAVVDVSIDGIRENSSaPTANIKCRRLPSGCVVQDMPNGYSKVTWVEH 521
                     *************************************************************98766779************************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++++ +h l+r+l++sgl  ga++wvatlqrqce+
  XP_010933869.1 522 AEYDEAAVHPLYRPLLRSGLGLGARRWVATLQRQCEC 558
                     ***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-21114182IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-22115184IPR009057Homeodomain-like
PROSITE profilePS5007118.074122182IPR001356Homeobox domain
SMARTSM003893.7E-19123186IPR001356Homeobox domain
PfamPF000464.9E-19125180IPR001356Homeobox domain
CDDcd000861.82E-19125183No hitNo description
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
PROSITE profilePS5084846.117324561IPR002913START domain
SuperFamilySSF559612.4E-32327558No hitNo description
CDDcd088751.58E-121330557No hitNo description
SMARTSM002343.9E-44333558IPR002913START domain
PfamPF018521.2E-51333558IPR002913START domain
SuperFamilySSF559618.43E-23579786No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MSFGGLFDGG SGGARVVADF PYGSSAMPAG AISQPRLVSP SLSKPLLSSP GLSLALQTNM  60
EGQGDRSLAS IVGGAGGGGH GGGGGGRDLD AVGTHREDEN ESKSGSENLE GGSGDDIDQE  120
NPRKKKRYHR HTPQQIQELE ALFKECPHPD EKQRLELSKR LNLESRQVKF WFQNRRTQMK  180
TQMERHENTI LKQENDKLRA ENMSIREAMR NPICSNCGGA AVLGEISLEE QHLRIENARL  240
KDELDRVCAL AGKFLGKPIS ALANPLPLPI LNSSLELAVG TTAFAGLGSV PMNLPVVTDF  300
PTGASSPLGS VITPVRPICS MGGVERERTM LLELALAAMD ELVKMAQMDE PLWVPSLEGV  360
KETLDDEEYE RIFPRCIGMK PVGFVSEATR ETGLVIINSS ALVETLMDAA RWADMFPCMI  420
ARSTTTEVIS SGMGGTRNGT LQLMYAELQV LSPLVSVREV NFLRFCKQIA EGAWAVVDVS  480
IDGIRENSSA PTANIKCRRL PSGCVVQDMP NGYSKVTWVE HAEYDEAAVH PLYRPLLRSG  540
LGLGARRWVA TLQRQCECLA ILMSSSLPTR DHTPITASGR RSMLKLAQRM TDNFCAGVCA  600
SSAHKWSKLS LGNIGEDVRV MTRQSVDDPG EPPGVVLSAA TSVWLPVSPM RLFDFLRDER  660
LRSEWDILSN GGPMQEMAHI AKGQDHGNAV SLLRASAVSA NQSSMLILQE TCTDASGSMV  720
VYAPVDIPAM HVVMNGGDSA YVALLPSGFA ILPDGGGGGG GPQKVGGSLL TVAFQILVNS  780
QPTAKLSVES VETVNNLISC TVQKIKAALH CEP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933869.10.0homeobox-leucine zipper protein ROC5
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A2H3Y9I90.0A0A2H3Y9I9_PHODC; homeobox-leucine zipper protein ROC5
STRINGXP_008795401.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]