PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933749.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 1633aa    MW: 179560 Da    PI: 5.7349
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933749.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.44e-0616131633526
                      --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                       C+ f+++G+Ck G++C++ H+
  XP_010933749.1 1613 VCK-FHESGHCKKGASCNYLHP 1633
                      588.*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.108.4E-8122182IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579032.21E-7126181IPR011011Zinc finger, FYVE/PHD-type
CDDcd155682.02E-19130175No hitNo description
SMARTSM002497.3E-6130176IPR001965Zinc finger, PHD-type
PROSITE patternPS013590131191IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.109.6E-26346431IPR003121SWIB/MDM2 domain
SuperFamilySSF475928.94E-21347425IPR003121SWIB/MDM2 domain
PfamPF022011.2E-15351424IPR003121SWIB/MDM2 domain
SMARTSM001510.0016358429IPR019835SWIB domain
PROSITE profilePS5136028.868487620IPR004343Plus-3 domain
SMARTSM007193.6E-48487597IPR004343Plus-3 domain
SuperFamilySSF1590424.45E-33488617IPR004343Plus-3 domain
PfamPF031261.7E-24492595IPR004343Plus-3 domain
SuperFamilySSF552775.75E-16827889IPR003169GYF domain
PROSITE profilePS5082912.745834886IPR003169GYF domain
SMARTSM004441.3E-9835888IPR003169GYF domain
Gene3DG3DSA:3.30.1490.403.2E-16836888IPR003169GYF domain
PfamPF022133.7E-9837878IPR003169GYF domain
PROSITE profilePS5010313.15916081633IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1633 aa     Download sequence    Send to blast
MDREEDVPPP IPPSPTSESE ETSFPQWEEG VEAKAAAVGA TEADDLQLFA SPSSRPSTLS  60
GDEEEAAAFE PVAPGDAAAG EAALQMGVEV VDPATEAASR ASGKRKRGRP PKGQGGRRAP  120
PAKRKEEEDV CFICFDGGNL VVCDRRGCSK VYHPACVNRD DAFFHTRGRW NCGWHICSIC  180
EKAAHYMCYT CTYSLCKGCI REAKFFAVRG NKGFCDTCYS TVMLIESNEN GNENKAGVDF  240
NDMNSWEYLF KKYWLDQKRK LVLTLEELKN AKNPWKGSRF SAHSEESSDE LYNANDDQEY  300
SSESSSGHHE GSTSSRRKVR RRSRNTVDDE SSAKEVDSER TSMPEDAEWA SQELLEFVAH  360
MKNGDKSVQS QFDVQALLLE YIKRNNLRDP RKKSQIVCDL RLQNLFGKPR VGHFEMLKLL  420
ESHFLIKEAS QIDADDDEAV VMDPDTGQVD AEGYSDTTAK MRLDKKRKSR KKIEEREPQT  480
NLDDYAAIDV HNINLIYLRR NLMEDLIDDI DMFNEKVVGS FVRIKIPGTG QRQDMYRLVQ  540
VVGTQMFAEK YKIGKKTTDI ALQILNLDKT EVVTIDVISN QEFTEEECKR LRQSVKCGLI  600
SRLTVGDVQN KARVLQAVKV DAWLESEKLR LSHLRDRASE TGRRKELREC VERLQLLSTP  660
EERMRRLNEV PEIHADPHMD PDYESAEEEE ADDKRDKYGR SRESLSRRKG RDFFSIGRGS  720
GSNFNWNGAS KSSSGSRVLS RGSLTEDAQD KLEAPSGGGD RENELSWNQV KDAQWTSSSG  780
APNSQASATG QEAGIWNNNQ LVTKPGNTYG IAPETTSASV PSRLSVPLNI NENDKVWHYQ  840
DPAGTVQGPF SMIQLRKWSK FFPPDLRIWL TTDRQENYIL LTDAMKSQNG LPQQEPQHNS  900
YPQPTNFAGA MDNRDNRYGG GLRGTDNSTW VGMQNGSNWN ASQNGATFST AVNILASAGR  960
WVPLSANLSV PKMEVVKGNN ASYGQPHGQS SPRPTTPFWN PYQQPCYQGG GDQGNAGRGN  1020
GVQDHGSAWN SDRPGESRTI GQGYDRQHSN WSYLNQQSQQ TFAEPWKARP VNDSNLLPAP  1080
TPQPSRRDWT RVQGSLHTSA STADSIQPIS SGWSTTQTTG FTGAHHLPTA NPNGGWDVPK  1140
QSEDQGSWSV TSASVPSISR MADVGTSWIP ERVDHLGDPQ LPGQQKPSEA NAPNILVNQS  1200
GPFPQKGETS YSNNAAVPRV SAMNKNQSFE SDYPSPTPRC HRHEFSVPND PDPAKKWPQA  1260
HDSSASKSQV SDPAVASLAF EPSDPGSQPS PEVDNMQLLS RYSDDVADKS IITEMQNVAT  1320
QKPFSEKQNK QPSLAGVERK LVDPVSNIKL TTEFDVLELS SDQGSEASSA PKPVSELHGW  1380
PPGPAQKQEP NGSSTVPAPP RQDLRFSGTE PINYSNLEGP QDMMGSEWSL PSPTPASRSS  1440
GWDIDADSTS GWGTLGQVSP NANSDRETPA KGDVNANLGW EASTMANVKG PGMGAANPGN  1500
SNPHTVWGAT AEGNPNQYSG WGAPSTGNAS QNLGWGAQTQ QGNTDASAGW GTGSNRSWNL  1560
PAGDPDGWGS QRKHHGDKYP RGRESGHGGG RISWDGSGEA SRPIPRGLGQ RGVCKFHESG  1620
HCKKGASCNY LHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A4e-15116197381Histone-lysine N-methyltransferase NSD3
4gnd_C4e-15116197381Histone-lysine N-methyltransferase NSD3
4gne_A4e-15116197381Histone-lysine N-methyltransferase NSD3
4gnf_A4e-15116197381Histone-lysine N-methyltransferase NSD3
4gng_A4e-15116197381Histone-lysine N-methyltransferase NSD3
4gng_D4e-15116197381Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a central role in integrating RNA silencing and chromatin signals in 21 nt siRNA-dependent DNA methylation on cytosine pathway leading to transcriptional gene silencing of specific sequences. Involved in a chromatin-based RNA silencing pathway that encompasses both post-transcriptional gene silencing (PTGS) (e.g. RDR1, RDR6 and AGO2) and transcriptional gene silencing (TGS) (e.g. siRNA-dependent DNA methylation and histone H3) components. Mediates siRNA accumulation at specific chromatin loci. Binds H3K4me0 through its PHD to enforce low levels of H3K4 methylation and gene silencing at a subset of genomic loci. {ECO:0000269|PubMed:22940247}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933749.10.0zinc finger CCCH domain-containing protein 19 isoform X1
SwissprotQ9SIV50.0C3H19_ARATH; Zinc finger CCCH domain-containing protein 19
TrEMBLA0A2H3YCR90.0A0A2H3YCR9_PHODC; zinc finger CCCH domain-containing protein 19-like
STRINGXP_008796873.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP717938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding