PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933570.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 569aa    MW: 63446 Da    PI: 7.6643
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933570.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.51e-14741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_010933570.1  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                    99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.5E-8153IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-10445No hitNo description
CDDcd002022.29E-14653No hitNo description
Gene3DG3DSA:3.30.50.103.6E-11741IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.0E-12741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF139195.3E-10281362IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MGKHGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLTNYTPMHA REPIDSEELK  60
VTKAKSISLK SKEQKLHKKK QSITTLGSER EIPYSDQNFR KIADGDTSNR SSSGSAISYS  120
ESCAHFGTTD ASDMTGSAQS NVWDPLVPSK KRTGITRPKS SSVEKLTKDL YTILHEQQSS  180
YQGSSEGDLL YESRTPMGSF EIGYGSVLIR HPKSKSVEEE SEASSLPEDN KSYIINEAYS  240
GIASFHVHSE NKGILSDSGN DKKSTAQVLQ ENGRRDKFSH DKLQILRDRE SPLCSTDLQD  300
VINLEVFTNY LTREEQQRLM KYLPSTDTIK PPESLKSMFS SPQFAASLSH FQQLLLEGIF  360
DLSFSGSNVE ECRTLKKLVL LSLTKFRWVE YYKQLKDVKC KQMTEGKGMA TRPKFPGFSD  420
LASLKRMRDG QNQNYPELKE TMRSPKRMCK SGSTNLLSGN QPQLNSCDAG SKLTDDADDF  480
IDNEEACFSP RSFFASPPDR VSMVDDSTDH DLLLDVPCNA SFPEAELLYH PWKQKIASSS  540
SPSEGGVAQG EESRSNFPSS FSNKLPKNR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933570.10.0GATA transcription factor 27 isoform X1
TrEMBLA0A2H3XNC00.0A0A2H3XNC0_PHODC; GATA transcription factor 27-like
STRINGXP_008786183.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.38e-94GATA transcription factor 26