PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010933558.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Trihelix

Protein Properties

Length: 391aa MW: 42504.7 Da PI: 10.6394

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010933558.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.7	1.1e-21	78	172	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqlea 87 +Wt++e+laLi+ +r+++ +lrrg+l++ +W+ev++++ + +++++qC++k e+l+kry+++++++ + +++ +st++yf++++a XP_010933558.1 78 CWTHEETLALIDSYRDKWYALRRGNLRASHWQEVADAVarrcarLPQASSKTSVQCRHKVEKLRKRYRAERQRSLAHdpSAPPTSTWVYFRKMDA 172 8***********************************999887778899*******************999955577789******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-21	77	173	No hit	No description
PROSITE profile	PS50090	5.993	79	141	IPR017877	Myb-like domain
SMART	SM00595	3.7E-7	86	178	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MASSSSAAAA HAADASKDPP SSPVPTPSSA AAAPSASAGA AIAASPSPSQ SPARSPSPLP 60 LXRLPPPPPP PAASLLPCWT HEETLALIDS YRDKWYALRR GNLRASHWQE VADAVARRCA 120 RLPQASSKTS VQCRHKVEKL RKRYRAERQR SLAHDPSAPP TSTWVYFRKM DAMEHGGASS 180 APYASASAAS RPSPSPVPPR SRSDEDDDDD EEDDEEDDGR ARAGGGSSSN TRSLHRLMAN 240 GGGIGGGLRF TIPKAVRSKI TTGSRVEERT PVPSRGGVLN PSPTNRFFKG YGGARPAMEE 300 MRMRLEKSRR RRKRDSPDAV GEMVSALRML GDGFLRMEQM KMEMAREMEK VRMEMELKRT 360 EMILDSQRRI VDAFVKGFFG GKKRSKVSPE A

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MASSSSAAAA HAADASKDPP SSPVPTPSSA AAAPSASAGA AIAASPSPSQ SPARSPSPLP  60
LXRLPPPPPP PAASLLPCWT HEETLALIDS YRDKWYALRR GNLRASHWQE VADAVARRCA  120
RLPQASSKTS VQCRHKVEKL RKRYRAERQR SLAHDPSAPP TSTWVYFRKM DAMEHGGASS  180
APYASASAAS RPSPSPVPPR SRSDEDDDDD EEDDEEDDGR ARAGGGSSSN TRSLHRLMAN  240
GGGIGGGLRF TIPKAVRSKI TTGSRVEERT PVPSRGGVLN PSPTNRFFKG YGGARPAMEE  300
MRMRLEKSRR RRKRDSPDAV GEMVSALRML GDGFLRMEQM KMEMAREMEK VRMEMELKRT  360
EMILDSQRRI VDAFVKGFFG GKKRSKVSPE A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008794930.1	1e-154	trihelix transcription factor ASIL2-like
TrEMBL	A0A2H3Y889	1e-153	A0A2H3Y889_PHODC; trihelix transcription factor ASIL2-like
STRING	XP_008794930.1	1e-153	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5689	32	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-33	Trihelix family protein