PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010933537.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

STAT

Protein Properties

Length: 614aa MW: 69108.9 Da PI: 6.6738

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010933537.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	190.7	1.6e-59	128	247	1	119
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk 94 ldvvllna+g++v+k++e+vasL+yad+g++vek+ ddaeapLL+sydG+e++s+drp+ llrG+a+fklkisqLssk+dnrLfr++f++++ ++ XP_010933537.1 128 LDVVLLNAFGRTVNKEMEIVASLVYADNGTPVEKTrDDAEAPLLTSYDGLEHPSTDRPVTLLRGCATFKLKISQLSSKSDNRLFRVCFRTMHAQR 222 8********************************9******************************************************* PP STAT 95 ypfleavskpirCisrsrntrsssl 119 ypflea+s+pi+Cisr+r++r+++l XP_010933537.1 223 YPFLEAYSHPIHCISRNRSNRPLAL 247 *******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55550	1.23E-8	512	592	IPR000980	SH2 domain
Gene3D	G3DSA:3.30.505.10	1.2E-6	513	579	IPR000980	SH2 domain
PROSITE profile	PS50001	9.93	516	579	IPR000980	SH2 domain

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence Send to blast
MPHISSKIEF PLEKWVHVGC EVATHHMRLH IDGKLVGEEP VTLLTNKHHY RDNFKRINFV 60 GNDGKLDGYV YHAQVLPISA SITDQFVKDP PVKLSLDSSG ISDGVEECGD GVWSIVGGKA 120 SCRRNFSLDV VLLNAFGRTV NKEMEIVASL VYADNGTPVE KTRDDAEAPL LTSYDGLEHP 180 STDRPVTLLR GCATFKLKIS QLSSKSDNRL FRVCFRTMHA QRYPFLEAYS HPIHCISRNR 240 SNRPLALGKR LASTRVLLDE IQSLKGNDGS RVIHDTYGDD RFRIPNQSVL RCNTPSKHSK 300 LEHDSSPSAI DANGILEKDE MSLKTSLEVR SNNFEGTDSA PSDSESTDAR NYESRWTKEA 360 MNPISDAIMF KYCLEGTNER LMLLKEMITS ACDEDITNFA EQVSLYAGCS HHQYQILISK 420 RLLQEGADTW NSITQNNCHV LWKDAVPEID KRFRNTAHSN RGLSGEDLEV LRGIAGCGDH 480 LGREEFDRMW YWLYPVAFSL SNEQINTMWA CISPKWIEGL ITREEAENAL KGPRGLQRPG 540 TFVLRFPTSR SWPHPDAGSL VVTYVAADST LHHKLLSFDY RKKDTSPLQE LLLEEPELSH 600 LGRVSRQGHA ASQS

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence Send to blast

MPHISSKIEF PLEKWVHVGC EVATHHMRLH IDGKLVGEEP VTLLTNKHHY RDNFKRINFV  60
GNDGKLDGYV YHAQVLPISA SITDQFVKDP PVKLSLDSSG ISDGVEECGD GVWSIVGGKA  120
SCRRNFSLDV VLLNAFGRTV NKEMEIVASL VYADNGTPVE KTRDDAEAPL LTSYDGLEHP  180
STDRPVTLLR GCATFKLKIS QLSSKSDNRL FRVCFRTMHA QRYPFLEAYS HPIHCISRNR  240
SNRPLALGKR LASTRVLLDE IQSLKGNDGS RVIHDTYGDD RFRIPNQSVL RCNTPSKHSK  300
LEHDSSPSAI DANGILEKDE MSLKTSLEVR SNNFEGTDSA PSDSESTDAR NYESRWTKEA  360
MNPISDAIMF KYCLEGTNER LMLLKEMITS ACDEDITNFA EQVSLYAGCS HHQYQILISK  420
RLLQEGADTW NSITQNNCHV LWKDAVPEID KRFRNTAHSN RGLSGEDLEV LRGIAGCGDH  480
LGREEFDRMW YWLYPVAFSL SNEQINTMWA CISPKWIEGL ITREEAENAL KGPRGLQRPG  540
TFVLRFPTSR SWPHPDAGSL VVTYVAADST LHHKLLSFDY RKKDTSPLQE LLLEEPELSH  600
LGRVSRQGHA ASQS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010933535.1	0.0	SH2 domain-containing protein A isoform X1
TrEMBL	A0A2H3XNE8	0.0	A0A2H3XNE8_PHODC; LOW QUALITY PROTEIN: SH2 domain-containing protein B-like
STRING	XP_008786220.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78540.1	1e-157	SH2 domain protein B