PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010933504.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 376aa MW: 42472 Da PI: 6.019 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171 | 3.8e-53 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtd+elv +yLk+kv+g k+el evi+ +d+yk+ePw+Lp k + ++++ew+fF++rd+ky++g+r+nrat sgyWkatgkd++++ XP_010933504.1 6 LPPGFRFHPTDDELVGYYLKRKVDGLKIEL-EVIPVIDLYKFEPWELPdKsFLPKRDREWFFFCPRDRKYPNGSRTNRATGSGYWKATGKDRKIV 99 79****************************.99**************96445566899************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + ++ gl+ktLvfy+grap ge+tdWvmheyrl XP_010933504.1 100 C-EPSVHGLRKTLVFYHGRAPGGERTDWVMHEYRL 133 *.8899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-61 | 3 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.136 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0071365 | Biological Process | cellular response to auxin stimulus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MSPMSLPPGF RFHPTDDELV GYYLKRKVDG LKIELEVIPV IDLYKFEPWE LPDKSFLPKR 60 DREWFFFCPR DRKYPNGSRT NRATGSGYWK ATGKDRKIVC EPSVHGLRKT LVFYHGRAPG 120 GERTDWVMHE YRLCEDLSQG ALNFVGAFAL CRIVKRHDHG QKIGDLQGES KAKKVCSSSM 180 IGFSQKRCFN EVGSTSEENQ SIMTDMLTRS NGSTRISSPE NRRGSGLHQI LIDSDQKDFS 240 ESHVSDASKV SSPKEEISES VIATMFPNSI EICAPCHLSP MSSYTNSREE ASMIDELNGH 300 GCCSSFPSSA YCMDMYNNVE DITFPSLAWD TPELMSASFR GIETWNPMLS PSICRQASEG 360 EEANLWLQED SMVIMK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-56 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-56 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00439 | DAP | Transfer from AT4G17980 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010933505.1 | 0.0 | NAC domain-containing protein 71 isoform X2 | ||||
TrEMBL | A0A2H3XNM0 | 0.0 | A0A2H3XNM0_PHODC; NAC domain-containing protein 71 | ||||
STRING | XP_008786297.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6209 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 1e-85 | NAC domain containing protein 71 |