PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933448.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 361aa    MW: 39737.7 Da    PI: 5.8673
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933448.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.14.7e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv++++++G g+W+  ++  g++R++k+c++rw +yl
   XP_010933448.1 14 KGPWTPEEDKKLVEYIQKHGHGSWRNLPKNAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.83.8e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E+  +++++  lG++ W+tIa  ++ gRt++++k++w+++l
   XP_010933448.1  67 RGKFSEDEERFIIHLHSVLGNK-WSTIATQLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.636961IPR017930Myb domain
SuperFamilySSF466894.23E-3211108IPR009057Homeodomain-like
SMARTSM007172.9E-161363IPR001005SANT/Myb domain
PfamPF002495.8E-181461IPR001005SANT/Myb domain
CDDcd001672.57E-131661No hitNo description
PROSITE profilePS5129426.83762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2565116IPR009057Homeodomain-like
SMARTSM007173.1E-1566114IPR001005SANT/Myb domain
PfamPF002491.0E-1467112IPR001005SANT/Myb domain
CDDcd001671.56E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGRSPCCDEV GVKKGPWTPE EDKKLVEYIQ KHGHGSWRNL PKNAGLNRCG KSCRLRWTNY  60
LRPGIKRGKF SEDEERFIIH LHSVLGNKWS TIATQLPGRT DNEIKNYWNT HLRKKLLLMG  120
IDPVTHRPRT DLDLLASLPN FLAAAKNLGN LTSPLDNVLR LQADAANLAR LQILQSLFQL  180
VGNNSPPYMD SRSSLLGSAS LQNYNLGDLL QMNRQLEGLI MNGFLGLPQN PIQMTSGFSD  240
LGNPQLPNNL QAYPESSVPL KEQEMVAQIH GSCSTTEHAM DGNDESTNPL LFSSSAIPTA  300
DSTPSLVSAS PENASTDQMQ DPINSNASTP LEDWEGLDLG GLDNDISWKN ILDQISGSNA  360
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933448.10.0transcription factor MYB41-like
TrEMBLA0A3Q0HY450.0A0A3Q0HY45_PHODC; transcription factor MYB93-like
STRINGXP_008796312.11e-156(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-94myb domain protein 9