PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933434.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 313aa    MW: 33516.7 Da    PI: 6.0636
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933434.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.31.4e-15205241135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  XP_010933434.1 205 CQNCGISEkmTPAMRRGPAGPRSLCNACGLMWANKGT 241
                     **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.2716499IPR010399Tify domain
SMARTSM009791.4E-96499IPR010399Tify domain
PfamPF062002.2E-136698IPR010399Tify domain
PROSITE profilePS5101713.096133175IPR010402CCT domain
PfamPF062035.9E-15133174IPR010402CCT domain
SMARTSM004012.8E-10199253IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.04E-11202255No hitNo description
CDDcd002025.00E-15204251No hitNo description
Gene3DG3DSA:3.30.50.105.4E-14204243IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.1E-13205241IPR000679Zinc finger, GATA-type
PROSITE patternPS003440205232IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSVASPPDTQ MYGHDGASGD GSAGAGGIEG GSGIEMMEVA ATTAAPALDQ DHLADAVDAA  60
MPLMSATSNQ LTLLFQGEVY VFDSVTPEKV QAVLLLLGGC EVPTGIAGMA LPCHQDDRGY  120
DDILRRTNIP AKRIASLIRF REKRKERNFD KKIRYNVRKE VALRMQRRKG QFAGKANPQE  180
GASASSSVDR GRNSTQDEPP RESKCQNCGI SEKMTPAMRR GPAGPRSLCN ACGLMWANKG  240
TLRSPAKVKM SIQSPANPNE HGEAMDSEFG SDNKALVPTS NNHDSVVTTA DIVTEGIPAG  300
LRQEMEEDLK AEQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933434.10.0GATA transcription factor 18 isoform X1
SwissprotA2XKR71e-100GAT18_ORYSI; GATA transcription factor 18
TrEMBLA0A3Q0I8C80.0A0A3Q0I8C8_PHODC; GATA transcription factor 18-like isoform X2
STRINGXP_008794051.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-69ZIM-LIKE 2