PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010933430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 365aa MW: 40630.2 Da PI: 4.6015 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.4e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l +++++G g+W++ +++ g+ R++k+c++rw +yl XP_010933430.1 16 KGSWTPEEDIRLMSYIQKYGHGNWRALPKKAGLLRCGKSCRLRWINYL 63 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.1e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l XP_010933430.1 69 RGNFTQEEEETIIKLHGLLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.168 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-31 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-25 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.20E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.048 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.34E-10 | 71 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-26 | 71 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MGRGRAPCCE KVGLNKGSWT PEEDIRLMSY IQKYGHGNWR ALPKKAGLLR CGKSCRLRWI 60 NYLRPDIKRG NFTQEEEETI IKLHGLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRLLS 120 RDQSQKTDKL EETPSSPSST TTNSSSDRGE GKSDSEHTNP SVDSTNSSED KIEIPIEPSM 180 DIWLMLEDAL PSSPQKTDTE DKNMWELQLE PNSLKVSPCS SPSHSLATNG RTSGGGRGVQ 240 ALNDTDMREA EKDPLEIPDV PIELELWDMI EDGDAGLFSP GVGAMEELGV HGNPTSLHEE 300 SSREEGSTIW LEYLEKELGL WGASDDNQEC LMSPWTEMEG DPVSCYFQKG PSSTSPLDLH 360 DLKVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-27 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010933430.1 | 0.0 | myb-related protein Zm1-like | ||||
TrEMBL | A0A2H3X0Z8 | 0.0 | A0A2H3X0Z8_PHODC; myb-related protein Zm1-like | ||||
STRING | XP_008776690.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 1e-68 | myb domain protein 63 |