PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933376.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 242aa    MW: 27706.1 Da    PI: 7.8767
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933376.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.1e-18109163256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq   Lee+F+++ +++ +++  +Ak+l+L  rqV vWFqNrRa+ k
  XP_010933376.1 109 RKKLRLSKEQSCYLEECFKEHTTLNPKQKLAIAKRLNLLPRQVEVWFQNRRARTK 163
                     678899***********************************************98 PP
2HD-ZIP_I/II113.11.8e-36109196188
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                     +kk+rlskeq+  LEe+F+e+++L+p++K ++a++L+l prqv+vWFqnrRARtk+kq E+dy++L ++++ l+een++L+ke +eL+
  XP_010933376.1 109 RKKLRLSKEQSCYLEECFKEHTTLNPKQKLAIAKRLNLLPRQVEVWFQNRRARTKLKQSEVDYKYLIQWCEYLTEENRMLRKEIQELK 196
                     69*************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-1781166IPR009057Homeodomain-like
SuperFamilySSF466898.98E-1896166IPR009057Homeodomain-like
PROSITE profilePS5007115.969105165IPR001356Homeobox domain
SMARTSM003891.2E-14107169IPR001356Homeobox domain
PfamPF000463.7E-15109163IPR001356Homeobox domain
CDDcd000861.56E-14109166No hitNo description
PROSITE patternPS000270140163IPR017970Homeobox, conserved site
SMARTSM003406.0E-14165208IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDIDSSMRNG DWGGNQSLTS QEPKLMDKDG GQPTIHPSLQ LELKLPWSTE TESEAGDEAK  60
SRGGVKGPTG SDDPCDDTKP SPSASHRVIA ERGSQGRHND SEGDGGRGRK KLRLSKEQSC  120
YLEECFKEHT TLNPKQKLAI AKRLNLLPRQ VEVWFQNRRA RTKLKQSEVD YKYLIQWCEY  180
LTEENRMLRK EIQELKAFKS PLQNVHHYKQ QTMLTMCPSC QHAIFLQKID SFHDTADREN  240
HP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112RGRKKLR
2157165RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933376.10.0homeobox-leucine zipper protein HAT4 isoform X1
SwissprotA2Z1U12e-49HOX11_ORYSI; Homeobox-leucine zipper protein HOX11
SwissprotQ67UE26e-49HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A2H3YFV01e-126A0A2H3YFV0_PHODC; homeobox-leucine zipper protein HAT4-like isoform X1
STRINGXP_008798014.11e-126(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.17e-44homeobox protein 2